RNA id: TU88800


Basic Information

Item Value
RNA id TU88800
length 243
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G77895
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1317721 ~ 1317963 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CACAGATGTTCTGTCTCCAGGTGAAACTCCAGCCCACTGGTGTGAGTAATTATGTTGCGCCACAGGCCAGATTCCTCTGCACCTGACTGATAGGTTCAAGTACAGCACTGAAATATCGCCTCTAGGAGCACAATGTGGAGAAATCTAAACCATGCATAGTTTCCCAACATTTTTGTCTTATCTATACAGTCTACGCCCACAAGCCTATGAGTAAGGCTCAAATGAGGCACAATGACACCAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88799 lncRNA upstream 58 1317251 ~ 1317663 (+) True G77894
TU88719 lncRNA upstream 130530 1186909 ~ 1187191 (+) True G77829
TU88716 lncRNA upstream 136293 1181202 ~ 1181428 (+) True G77826
TU88698 lncRNA upstream 151104 1160776 ~ 1166617 (+) True CI01000013_01115756_01164524
TU88690 lncRNA upstream 243892 1073502 ~ 1073829 (+) True G77800
TU88764 lncRNA downstream 95828 1413791 ~ 1437922 (+) False G77860
TU88762 lncRNA downstream 111725 1431326 ~ 1437922 (+) False G77860
TU88763 lncRNA downstream 111752 1431326 ~ 1437922 (+) True G77860
TU88780 lncRNA downstream 152857 1470820 ~ 1471360 (+) True G77875
TU88824 lncRNA downstream 166511 1484474 ~ 1484721 (+) True G77918
CI01000013_01275415_01295230.mRNA mRNA upstream 22397 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01220794_01229752.mRNA mRNA upstream 86763 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01115756_01164524.mRNA mRNA upstream 153197 1115756 ~ 1164524 (+) False CI01000013_01115756_01164524
CI01000013_01036536_01049545.mRNA mRNA upstream 267839 1036536 ~ 1049882 (+) True CI01000013_01036536_01049545
CI01000013_01007844_01029438.mRNA mRNA upstream 288262 1007844 ~ 1029459 (+) True CI01000013_01007844_01029438
CI01000013_01335438_01381270.mRNA mRNA downstream 17475 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01405290_01429838.mRNA mRNA downstream 87327 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01443540_01469011.mRNA mRNA downstream 125577 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01629280_01635701.mRNA mRNA downstream 311265 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_01762491_01764612.mRNA mRNA downstream 443795 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
TU88574 other upstream 364752 946521 ~ 952969 (+) True G77695
TU88411 other upstream 608172 708833 ~ 709549 (+) True G77533
TU90328 other downstream 1148802 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 2266045 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2746970 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3517115 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4738335 6056662 ~ 6056782 (+) True G81681

Expression Profile