RNA id: TU88887


Basic Information

Item Value
RNA id TU88887
length 301
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G77981
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1616704 ~ 1617004 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAGTCTTTTTGGGAAAGATGCAACACGTTTTTCACACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACGTTGGTGGACAGACATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCAAGAACAGTCACGGAGTTGTTGTGAAGCCACTCCTTCGTTATTTTAGCTGTGTGCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88914 lncRNA upstream 2928 1613509 ~ 1613776 (+) True G78008
TU88852 lncRNA upstream 86129 1530320 ~ 1530575 (+) True G77946
TU88835 lncRNA upstream 110594 1505883 ~ 1506110 (+) True G77929
TU88824 lncRNA upstream 131983 1484474 ~ 1484721 (+) True G77918
TU88780 lncRNA upstream 145344 1470820 ~ 1471360 (+) True G77875
TU88916 lncRNA downstream 2611 1619615 ~ 1619853 (+) True G78010
TU88923 lncRNA downstream 13805 1630809 ~ 1631072 (+) True G78017
TU88925 lncRNA downstream 14799 1631803 ~ 1632003 (+) True G78019
TU88926 lncRNA downstream 15187 1632191 ~ 1632513 (+) True G78020
TU88927 lncRNA downstream 17053 1634057 ~ 1634296 (+) True CI01000013_01629280_01635701
CI01000013_01443540_01469011.mRNA mRNA upstream 147628 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01405290_01429838.mRNA mRNA upstream 186391 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01335438_01381270.mRNA mRNA upstream 235434 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01275415_01295230.mRNA mRNA upstream 321380 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01220794_01229752.mRNA mRNA upstream 385746 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01629280_01635701.mRNA mRNA downstream 12224 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_01762491_01764612.mRNA mRNA downstream 144754 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01950237_01964249.mRNA mRNA downstream 333011 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01989323_01993472.mRNA mRNA downstream 371527 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_02033469_02034368.mRNA mRNA downstream 416111 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
TU88574 other upstream 663735 946521 ~ 952969 (+) True G77695
TU88411 other upstream 907155 708833 ~ 709549 (+) True G77533
TU90328 other downstream 849761 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1967004 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2447929 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3218074 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4439294 6056662 ~ 6056782 (+) True G81681

Expression Profile