RNA id: TU88925


Basic Information

Item Value
RNA id TU88925
length 201
lncRNA type intronic
GC content 0.33
exon number 1
gene id G78019
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1631803 ~ 1632003 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTCTTGTCTTTTAAAGGGATAGTTTAACCAAAAATGAAAAAGATGTCATCACTTACTCACCCTCATTATTCCAATCCAAACCTGTGTTCTTTCTTCTGTTGAACACAAAAGAAGATATTTTAAAAATATTGGTAACCAGGCAGTTGATGGTATTTTTTTTTCCTACGATGGAAGTCAATGGCTACACTCAACTGTTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88923 lncRNA upstream 731 1630809 ~ 1631072 (+) True G78017
TU88916 lncRNA upstream 11950 1619615 ~ 1619853 (+) True G78010
TU88887 lncRNA upstream 14799 1616704 ~ 1617004 (+) True G77981
TU88914 lncRNA upstream 18027 1613509 ~ 1613776 (+) True G78008
TU88852 lncRNA upstream 101228 1530320 ~ 1530575 (+) True G77946
TU88926 lncRNA downstream 188 1632191 ~ 1632513 (+) True G78020
TU88927 lncRNA downstream 2054 1634057 ~ 1634296 (+) True CI01000013_01629280_01635701
TU88935 lncRNA downstream 10566 1642569 ~ 1643119 (+) True G78028
TU88939 lncRNA downstream 18565 1650568 ~ 1650776 (+) True G78032
TU88982 lncRNA downstream 73390 1705393 ~ 1705660 (+) True G78073
CI01000013_01443540_01469011.mRNA mRNA upstream 162727 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01405290_01429838.mRNA mRNA upstream 201490 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01335438_01381270.mRNA mRNA upstream 250533 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01275415_01295230.mRNA mRNA upstream 336479 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01220794_01229752.mRNA mRNA upstream 400845 1220794 ~ 1230958 (+) True CI01000013_01220794_01229752
CI01000013_01762491_01764612.mRNA mRNA downstream 129755 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01950237_01964249.mRNA mRNA downstream 318012 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01989323_01993472.mRNA mRNA downstream 356528 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_02033469_02034368.mRNA mRNA downstream 401112 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02081079_02127936.mRNA mRNA downstream 448663 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
TU88574 other upstream 678834 946521 ~ 952969 (+) True G77695
TU88411 other upstream 922254 708833 ~ 709549 (+) True G77533
TU90328 other downstream 834762 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1952005 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2432930 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3203075 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4424295 6056662 ~ 6056782 (+) True G81681

Expression Profile