RNA id: TU88935


Basic Information

Item Value
RNA id TU88935
length 287
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G78028
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1642569 ~ 1643119 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAGACATCTTTGTTTCGAAATCAAAATCTGGTGTCAGGCGTTTAACATTTATAATGGTATGCTAAAGTGACATGGTAGATTACCTGGATTGACTAATGGTTTCTCATGACTACAAAGTTTCTCTCAATGTTAAGTGTGGTTGAGAACACGGAGTCTCTTACGTGTCACGACAGGATGTAGTAATTCTCAGAAGAACCCAAAAGAAGACATTTTGAAGAAAGAATCACTTTGGTTACCATTGACTTCCACTGTATGGAGATATATCTCAAAATATCTTTTATGTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88927 lncRNA upstream 8273 1634057 ~ 1634296 (+) True CI01000013_01629280_01635701
TU88926 lncRNA upstream 10056 1632191 ~ 1632513 (+) True G78020
TU88925 lncRNA upstream 10566 1631803 ~ 1632003 (+) True G78019
TU88923 lncRNA upstream 11497 1630809 ~ 1631072 (+) True G78017
TU88916 lncRNA upstream 22716 1619615 ~ 1619853 (+) True G78010
TU88939 lncRNA downstream 7449 1650568 ~ 1650776 (+) True G78032
TU88982 lncRNA downstream 62274 1705393 ~ 1705660 (+) True G78073
TU89033 lncRNA downstream 144424 1787543 ~ 1787793 (+) True G78124
TU89140 lncRNA downstream 286361 1929480 ~ 1929832 (+) True G78231
TU89157 lncRNA downstream 313594 1956713 ~ 1957220 (+) True G78247
CI01000013_01629280_01635701.mRNA mRNA upstream 6797 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_01443540_01469011.mRNA mRNA upstream 173493 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01405290_01429838.mRNA mRNA upstream 212256 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01335438_01381270.mRNA mRNA upstream 261299 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01275415_01295230.mRNA mRNA upstream 347245 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01762491_01764612.mRNA mRNA downstream 118639 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01950237_01964249.mRNA mRNA downstream 306896 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01989323_01993472.mRNA mRNA downstream 345412 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_02033469_02034368.mRNA mRNA downstream 389996 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02081079_02127936.mRNA mRNA downstream 437547 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
TU88574 other upstream 689600 946521 ~ 952969 (+) True G77695
TU88411 other upstream 933020 708833 ~ 709549 (+) True G77533
TU90328 other downstream 823646 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1940889 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2421814 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3191959 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4413179 6056662 ~ 6056782 (+) True G81681

Expression Profile