RNA id: TU88939


Basic Information

Item Value
RNA id TU88939
length 209
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G78032
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1650568 ~ 1650776 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTATGTGATCAGTTGTGGAATCCAACCATTACACATCTGAGGTAACGTAGTTAGCCTACTTTATTGAGTATTTCCATTTTATGTCACTTTACATATTTACTATTAATAGTAAATTAATAAATTAATAATTAATAAAGTTAAGATCATCATGTTTGTAGCGTGATCTAGGGGATTAAAACGTATACCTATAGGCAGACCTAGTGGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88935 lncRNA upstream 7449 1642569 ~ 1643119 (+) True G78028
TU88927 lncRNA upstream 16272 1634057 ~ 1634296 (+) True CI01000013_01629280_01635701
TU88926 lncRNA upstream 18055 1632191 ~ 1632513 (+) True G78020
TU88925 lncRNA upstream 18565 1631803 ~ 1632003 (+) True G78019
TU88923 lncRNA upstream 19496 1630809 ~ 1631072 (+) True G78017
TU88982 lncRNA downstream 54617 1705393 ~ 1705660 (+) True G78073
TU89033 lncRNA downstream 136767 1787543 ~ 1787793 (+) True G78124
TU89140 lncRNA downstream 278704 1929480 ~ 1929832 (+) True G78231
TU89157 lncRNA downstream 305937 1956713 ~ 1957220 (+) True G78247
TU89165 lncRNA downstream 314387 1965163 ~ 1965423 (+) True G78254
CI01000013_01629280_01635701.mRNA mRNA upstream 14796 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_01443540_01469011.mRNA mRNA upstream 181492 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01405290_01429838.mRNA mRNA upstream 220255 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01335438_01381270.mRNA mRNA upstream 269298 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01275415_01295230.mRNA mRNA upstream 355244 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01762491_01764612.mRNA mRNA downstream 110982 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01950237_01964249.mRNA mRNA downstream 299239 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01989323_01993472.mRNA mRNA downstream 337755 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_02033469_02034368.mRNA mRNA downstream 382339 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02081079_02127936.mRNA mRNA downstream 429890 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
TU88574 other upstream 697599 946521 ~ 952969 (+) True G77695
TU88411 other upstream 941019 708833 ~ 709549 (+) True G77533
TU90328 other downstream 815989 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1933232 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2414157 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3184302 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4405522 6056662 ~ 6056782 (+) True G81681

Expression Profile