RNA id: TU88982


Basic Information

Item Value
RNA id TU88982
length 268
lncRNA type inter_gene
GC content 0.44
exon number 1
gene id G78073
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1705393 ~ 1705660 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGAAATATCACATGGTCCTAAGTATTCAGACCCTTTGCTCAGTATTTAGTAGAAGCACCCTTTTGATCTAATACAGCCATGAGTCTTTTTGGGAAAGATGCAACAAGTTTTTCACACCTGGATTTGGGGATCCTCTGCCATTCCTCCTTGCAGATCCTCTCCAGTTCTGTCAGGTTGGATGGTAAACGTTGGTGGACAGACATTTTTAGGTCTCTCCAGAGATGCTCAATTGGGTTTAAGTCAGGGCTCTGGCTGGGCCATTCNNNN

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88939 lncRNA upstream 54617 1650568 ~ 1650776 (+) True G78032
TU88935 lncRNA upstream 62274 1642569 ~ 1643119 (+) True G78028
TU88927 lncRNA upstream 71097 1634057 ~ 1634296 (+) True CI01000013_01629280_01635701
TU88926 lncRNA upstream 72880 1632191 ~ 1632513 (+) True G78020
TU88925 lncRNA upstream 73390 1631803 ~ 1632003 (+) True G78019
TU89033 lncRNA downstream 81883 1787543 ~ 1787793 (+) True G78124
TU89140 lncRNA downstream 223820 1929480 ~ 1929832 (+) True G78231
TU89157 lncRNA downstream 251053 1956713 ~ 1957220 (+) True G78247
TU89165 lncRNA downstream 259503 1965163 ~ 1965423 (+) True G78254
TU89171 lncRNA downstream 269400 1975060 ~ 1975381 (+) True G78260
CI01000013_01629280_01635701.mRNA mRNA upstream 69621 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_01443540_01469011.mRNA mRNA upstream 236317 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01405290_01429838.mRNA mRNA upstream 275080 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01335438_01381270.mRNA mRNA upstream 324123 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01275415_01295230.mRNA mRNA upstream 410069 1275122 ~ 1295324 (+) True CI01000013_01275415_01295230
CI01000013_01762491_01764612.mRNA mRNA downstream 56098 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01950237_01964249.mRNA mRNA downstream 244355 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01989323_01993472.mRNA mRNA downstream 282871 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_02033469_02034368.mRNA mRNA downstream 327455 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02081079_02127936.mRNA mRNA downstream 375006 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
TU88574 other upstream 752424 946521 ~ 952969 (+) True G77695
TU88411 other upstream 995844 708833 ~ 709549 (+) True G77533
TU90328 other downstream 761105 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1878348 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2359273 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3129418 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4350638 6056662 ~ 6056782 (+) True G81681

Expression Profile