RNA id: TU89033


Basic Information

Item Value
RNA id TU89033
length 251
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G78124
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1787543 ~ 1787793 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTGTCATTAATTACTCACCCTCATTTTGTTCCAAACCCATAAGTCCTTCATTCATCTTCAGAACACAAATTAAGATATTTTTGATGAAATACGAGAACTCCCCCATAGACATCAATGCAATTACCACTTTCAAGGCCCAGAAAGGTAGTAGACATCGTTAAAATAGTCCACATGACTACAATGGTTCAACCTTAATTTTATGAAACAACAAGAATACTTGTGCGAAAAAAAAAAAAAAAGAAAAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU88982 lncRNA upstream 81883 1705393 ~ 1705660 (+) True G78073
TU88939 lncRNA upstream 136767 1650568 ~ 1650776 (+) True G78032
TU88935 lncRNA upstream 144424 1642569 ~ 1643119 (+) True G78028
TU88927 lncRNA upstream 153247 1634057 ~ 1634296 (+) True CI01000013_01629280_01635701
TU88926 lncRNA upstream 155030 1632191 ~ 1632513 (+) True G78020
TU89140 lncRNA downstream 141687 1929480 ~ 1929832 (+) True G78231
TU89157 lncRNA downstream 168920 1956713 ~ 1957220 (+) True G78247
TU89165 lncRNA downstream 177370 1965163 ~ 1965423 (+) True G78254
TU89171 lncRNA downstream 187267 1975060 ~ 1975381 (+) True G78260
TU89174 lncRNA downstream 190590 1978383 ~ 1978728 (+) True G78263
CI01000013_01762491_01764612.mRNA mRNA upstream 22738 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01629280_01635701.mRNA mRNA upstream 151771 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_01443540_01469011.mRNA mRNA upstream 318467 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01405290_01429838.mRNA mRNA upstream 357230 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01335438_01381270.mRNA mRNA upstream 406273 1335438 ~ 1381270 (+) True CI01000013_01335438_01381270
CI01000013_01950237_01964249.mRNA mRNA downstream 162222 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01989323_01993472.mRNA mRNA downstream 200738 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_02033469_02034368.mRNA mRNA downstream 245322 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02081079_02127936.mRNA mRNA downstream 292873 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
CI01000013_02386700_02394730.mRNA mRNA downstream 598555 2386348 ~ 2395296 (+) True CI01000013_02386700_02394730
TU88574 other upstream 834574 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1077994 708833 ~ 709549 (+) True G77533
TU90328 other downstream 678972 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1796215 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2277140 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 3047285 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4268505 6056662 ~ 6056782 (+) True G81681

Expression Profile