RNA id: TU89165


Basic Information

Item Value
RNA id TU89165
length 261
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G78254
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1965163 ~ 1965423 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTTGATTGATTTTGTTGCTTCTCATTGTCATGTCGCGTCTAGTGTGGACAGTCAGATTGCTTGTCGCTGAAATCTTACTGCATTGCGTGTAGTTAGGACACAGTGATAGACTGCGGCATTGACCAACTGAAACCTGGTCTAAAGTCAATGATGCAATATTTTTTTTGTTATTTAAAGAGCACGTTAGTAAAATGCGCCGATAGGCACGCATACACTCTGCTTATTACAGACACAGGGACGCGCAGCAGCACACAAACATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89157 lncRNA upstream 7943 1956713 ~ 1957220 (+) True G78247
TU89140 lncRNA upstream 35331 1929480 ~ 1929832 (+) True G78231
TU89033 lncRNA upstream 177370 1787543 ~ 1787793 (+) True G78124
TU88982 lncRNA upstream 259503 1705393 ~ 1705660 (+) True G78073
TU88939 lncRNA upstream 314387 1650568 ~ 1650776 (+) True G78032
TU89171 lncRNA downstream 9637 1975060 ~ 1975381 (+) True G78260
TU89174 lncRNA downstream 12960 1978383 ~ 1978728 (+) True G78263
TU89175 lncRNA downstream 13852 1979275 ~ 1979529 (+) True G78264
TU89176 lncRNA downstream 14419 1979842 ~ 1980074 (+) True G78265
TU90080 lncRNA downstream 165095 2130518 ~ 2130751 (+) True G79075
CI01000013_01950237_01964249.mRNA mRNA upstream 873 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01762491_01764612.mRNA mRNA upstream 200358 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01629280_01635701.mRNA mRNA upstream 329391 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_01443540_01469011.mRNA mRNA upstream 496087 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01405290_01429838.mRNA mRNA upstream 534850 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01989323_01993472.mRNA mRNA downstream 23108 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_02033469_02034368.mRNA mRNA downstream 67692 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02081079_02127936.mRNA mRNA downstream 115243 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
CI01000013_02386700_02394730.mRNA mRNA downstream 420925 2386348 ~ 2395296 (+) True CI01000013_02386700_02394730
CI01000013_02409027_02409452.mRNA mRNA downstream 441883 2407306 ~ 2409607 (+) True CI01000013_02409027_02409452
TU88574 other upstream 1012194 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1255614 708833 ~ 709549 (+) True G77533
TU90328 other downstream 501342 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1618585 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2099510 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2869655 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4090875 6056662 ~ 6056782 (+) True G81681

Expression Profile