RNA id: TU89171


Basic Information

Item Value
RNA id TU89171
length 322
lncRNA type inter_gene
GC content 0.29
exon number 1
gene id G78260
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 1975060 ~ 1975381 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTAAATACATTTTTACTTGTTAGACCAACTCCATCACTGCATCCACACTGTAAAAAAGAATTGTTGGTTTAACTTAAAAAAGTAAGTAACCTTAAAATTTTGAGTTCATTGAAATTAAAAATTTGAGTTAATTCAATGAAGGCGATTGGTTTAATCAACAGAAACTCAAAGTATTATGTTATCTGAACCACATTAATTATTGAAGTTGATTTGACAAAAGAAAAAATGTTGTGATAACAAATCATAAAAATATTTTTTTACAGTGTACTCTGAGTTTGGGTCGCTTTAACATGCATTTGGGAATGCAACATGCAGCAACCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89165 lncRNA upstream 9637 1965163 ~ 1965423 (+) True G78254
TU89157 lncRNA upstream 17840 1956713 ~ 1957220 (+) True G78247
TU89140 lncRNA upstream 45228 1929480 ~ 1929832 (+) True G78231
TU89033 lncRNA upstream 187267 1787543 ~ 1787793 (+) True G78124
TU88982 lncRNA upstream 269400 1705393 ~ 1705660 (+) True G78073
TU89174 lncRNA downstream 3002 1978383 ~ 1978728 (+) True G78263
TU89175 lncRNA downstream 3894 1979275 ~ 1979529 (+) True G78264
TU89176 lncRNA downstream 4461 1979842 ~ 1980074 (+) True G78265
TU90080 lncRNA downstream 155137 2130518 ~ 2130751 (+) True G79075
TU90249 lncRNA downstream 327936 2303317 ~ 2303695 (+) True G79232
CI01000013_01950237_01964249.mRNA mRNA upstream 10770 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01762491_01764612.mRNA mRNA upstream 210255 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_01629280_01635701.mRNA mRNA upstream 339288 1629228 ~ 1635772 (+) False CI01000013_01629280_01635701
CI01000013_01443540_01469011.mRNA mRNA upstream 505984 1443540 ~ 1469076 (+) True CI01000013_01443540_01469011
CI01000013_01405290_01429838.mRNA mRNA upstream 544747 1405290 ~ 1430313 (+) False CI01000013_01405290_01429838
CI01000013_01989323_01993472.mRNA mRNA downstream 13150 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_02033469_02034368.mRNA mRNA downstream 57734 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02081079_02127936.mRNA mRNA downstream 105285 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
CI01000013_02386700_02394730.mRNA mRNA downstream 410967 2386348 ~ 2395296 (+) True CI01000013_02386700_02394730
CI01000013_02409027_02409452.mRNA mRNA downstream 431925 2407306 ~ 2409607 (+) True CI01000013_02409027_02409452
TU88574 other upstream 1022091 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1265511 708833 ~ 709549 (+) True G77533
TU90328 other downstream 491384 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1608627 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 2089552 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2859697 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 4080917 6056662 ~ 6056782 (+) True G81681

Expression Profile