RNA id: TU90249


Basic Information

Item Value
RNA id TU90249
length 294
lncRNA type antisense_over
GC content 0.40
exon number 2
gene id G79232
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2303317 ~ 2303695 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGAAGATGGTGAGGATCTACTGCCCTCCAGTGGACAGATGTGATACAAGAATAAAGTTATTGCTGTTTGTGAAGCTTAGCACATTTAAACAAATAAATGTATGTATTCTATTCTGTATATTTTGGTCTGGTAACACAAATCCTGTGTGTGTGCTTTTCTTGAAGTAAGGTGGTCAGAATGTATCATACCTTACTGAAGCTTCCCTTTCTTTTCAGTAGCCACTTATTTCGTTTGGCAGTTTCCTCTCGGATGGACAGGCAGACATCTAGATGAATCACTCCCATATCATCCTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90080 lncRNA upstream 172566 2130518 ~ 2130751 (+) True G79075
TU89176 lncRNA upstream 323243 1979842 ~ 1980074 (+) True G78265
TU89175 lncRNA upstream 323788 1979275 ~ 1979529 (+) True G78264
TU89174 lncRNA upstream 324589 1978383 ~ 1978728 (+) True G78263
TU89171 lncRNA upstream 327936 1975060 ~ 1975381 (+) True G78260
TU90259 lncRNA downstream 13035 2316730 ~ 2316943 (+) True G79241
TU90199 lncRNA downstream 68035 2371730 ~ 2385188 (+) True G79185
TU90209 lncRNA downstream 115826 2419521 ~ 2420107 (+) True G79194
TU90308 lncRNA downstream 132747 2436442 ~ 2436843 (+) True G79290
TU90309 lncRNA downstream 133953 2437648 ~ 2437854 (+) True G79291
CI01000013_02081079_02127936.mRNA mRNA upstream 175048 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
CI01000013_02033469_02034368.mRNA mRNA upstream 268579 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_01989323_01993472.mRNA mRNA upstream 309242 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_01950237_01964249.mRNA mRNA upstream 339027 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01762491_01764612.mRNA mRNA upstream 538512 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_02386700_02394730.mRNA mRNA downstream 82653 2386348 ~ 2395296 (+) True CI01000013_02386700_02394730
CI01000013_02409027_02409452.mRNA mRNA downstream 103611 2407306 ~ 2409607 (+) True CI01000013_02409027_02409452
CI01000013_02411870_02429950.mRNA mRNA downstream 106732 2410427 ~ 2429957 (+) True CI01000013_02411870_02429950
CI01000013_02510121_02510417.mRNA mRNA downstream 206388 2510083 ~ 2510534 (+) False CI01000013_02510121_02510417
CI01000013_02528016_02529126.mRNA mRNA downstream 223753 2527448 ~ 2529246 (+) True CI01000013_02528016_02529126
TU88574 other upstream 1350348 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1593768 708833 ~ 709549 (+) True G77533
TU90328 other downstream 163070 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1280313 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1761238 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2531383 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3752603 6056662 ~ 6056782 (+) True G81681

Expression Profile