RNA id: TU90259


Basic Information

Item Value
RNA id TU90259
length 214
lncRNA type inter_gene
GC content 0.24
exon number 1
gene id G79241
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2316730 ~ 2316943 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTAAATGCAAAACAAAAATCAATAAAGTATACATCTTATGATTAGCATGTTTGCAGTTTATGATTTACTGCAATAATCATATTTTTTTTGGGCTTAGTCTTTTATTTATATTCCTTATTTTTATTAATAGGTTATTTCTTAAAGATAAGCAGTGAAGCAATTTTGTTAAAATAGTAATATTTGAAGGTTTTGCAAACTGTGGTGAAATGTAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90249 lncRNA upstream 13035 2303317 ~ 2303695 (+) True G79232
TU90080 lncRNA upstream 185979 2130518 ~ 2130751 (+) True G79075
TU89176 lncRNA upstream 336656 1979842 ~ 1980074 (+) True G78265
TU89175 lncRNA upstream 337201 1979275 ~ 1979529 (+) True G78264
TU89174 lncRNA upstream 338002 1978383 ~ 1978728 (+) True G78263
TU90199 lncRNA downstream 54787 2371730 ~ 2385188 (+) True G79185
TU90209 lncRNA downstream 102578 2419521 ~ 2420107 (+) True G79194
TU90308 lncRNA downstream 119499 2436442 ~ 2436843 (+) True G79290
TU90309 lncRNA downstream 120705 2437648 ~ 2437854 (+) True G79291
TU90322 lncRNA downstream 140445 2457388 ~ 2457601 (+) True G79303
CI01000013_02081079_02127936.mRNA mRNA upstream 188461 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
CI01000013_02033469_02034368.mRNA mRNA upstream 281992 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_01989323_01993472.mRNA mRNA upstream 322655 1988531 ~ 1994075 (+) True CI01000013_01989323_01993472
CI01000013_01950237_01964249.mRNA mRNA upstream 352440 1950015 ~ 1964290 (+) True CI01000013_01950237_01964249
CI01000013_01762491_01764612.mRNA mRNA upstream 551925 1761758 ~ 1764805 (+) True CI01000013_01762491_01764612
CI01000013_02386700_02394730.mRNA mRNA downstream 69405 2386348 ~ 2395296 (+) True CI01000013_02386700_02394730
CI01000013_02409027_02409452.mRNA mRNA downstream 90363 2407306 ~ 2409607 (+) True CI01000013_02409027_02409452
CI01000013_02411870_02429950.mRNA mRNA downstream 93484 2410427 ~ 2429957 (+) True CI01000013_02411870_02429950
CI01000013_02510121_02510417.mRNA mRNA downstream 193140 2510083 ~ 2510534 (+) False CI01000013_02510121_02510417
CI01000013_02528016_02529126.mRNA mRNA downstream 210505 2527448 ~ 2529246 (+) True CI01000013_02528016_02529126
TU88574 other upstream 1363761 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1607181 708833 ~ 709549 (+) True G77533
TU90328 other downstream 149822 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1267065 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1747990 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2518135 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3739355 6056662 ~ 6056782 (+) True G81681

Expression Profile