RNA id: TU90308


Basic Information

Item Value
RNA id TU90308
length 402
lncRNA type inter_gene
GC content 0.49
exon number 1
gene id G79290
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2436442 ~ 2436843 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCAAATAGGTGTTTAAATGGAGAAAAAAACCTTGGGAGAAACCAGGCTTAGTCGGGGGACCAGTTCTCCTCTGGCCAACAGTGCTTTGTTACGATTCAGGTAGCTATCATAAGTCCGACAAGATCGCAACATTCAAAGTATTTATTCCAGTTCCATCCAATTGAGGATCGTATTCATCACGCCGGTATGGACGGTTGTTGAGGAACTGTGTCGTGGCTGTCGTGTCGATGAGGCCCTCACAGTGGATGATCTAGTTGACTCAATCTCTGCTGATACTTCAGGGCTGCGTTGTGGTCGTGTCAAGGTGCAGGTCCTTGGTCTCACCTGTATACGGCCCGGATCCGGTTGACTACGGTGAACCTCGGGATAACCAGAAAGACTAATATTAGCGTAGATGCCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90209 lncRNA upstream 16335 2419521 ~ 2420107 (+) True G79194
TU90199 lncRNA upstream 51254 2371730 ~ 2385188 (+) True G79185
TU90259 lncRNA upstream 119499 2316730 ~ 2316943 (+) True G79241
TU90249 lncRNA upstream 132747 2303317 ~ 2303695 (+) True G79232
TU90080 lncRNA upstream 305691 2130518 ~ 2130751 (+) True G79075
TU90309 lncRNA downstream 805 2437648 ~ 2437854 (+) True G79291
TU90322 lncRNA downstream 20545 2457388 ~ 2457601 (+) True G79303
TU90329 lncRNA downstream 32040 2468883 ~ 2469113 (+) True G79310
TU90208 lncRNA downstream 73442 2513478 ~ 2513855 (+) True G79193
TU90351 lncRNA downstream 89263 2526106 ~ 2526930 (+) True G79332
CI01000013_02411870_02429950.mRNA mRNA upstream 6485 2410427 ~ 2429957 (+) True CI01000013_02411870_02429950
CI01000013_02409027_02409452.mRNA mRNA upstream 26835 2407306 ~ 2409607 (+) True CI01000013_02409027_02409452
CI01000013_02386700_02394730.mRNA mRNA upstream 41146 2386348 ~ 2395296 (+) True CI01000013_02386700_02394730
CI01000013_02081079_02127936.mRNA mRNA upstream 308173 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
CI01000013_02033469_02034368.mRNA mRNA upstream 401704 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02510121_02510417.mRNA mRNA downstream 73240 2510083 ~ 2510534 (+) False CI01000013_02510121_02510417
CI01000013_02528016_02529126.mRNA mRNA downstream 90605 2527448 ~ 2529246 (+) True CI01000013_02528016_02529126
CI01000013_02656037_02664145.mRNA mRNA downstream 219194 2656037 ~ 2664398 (+) True CI01000013_02656037_02664145
CI01000013_02666598_02669821.mRNA mRNA downstream 229755 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02685665_02686639.mRNA mRNA downstream 245624 2682467 ~ 2686835 (+) True CI01000013_02685665_02686639
TU88574 other upstream 1483473 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1726893 708833 ~ 709549 (+) True G77533
TU90328 other downstream 29922 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1147165 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1628090 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2398235 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3619455 6056662 ~ 6056782 (+) True G81681

Expression Profile