RNA id: TU90309


Basic Information

Item Value
RNA id TU90309
length 207
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G79291
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2437648 ~ 2437854 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTAGATAGCAGTAATTTTGCTTTATGCTGTTGATCACATGACCTGATTTCAACTGTGGTGTATAAAAGGGGACATTAATTTTATTTTTTATTTTTTTAATCGTACAAGCTTAATGCAATCCATTGTGTGCACAAAAAGGGAGGGAGGGTGATATTGCCCCAAGCCACTAGAGAGTTTCACCATAAAGAGGGATTTGTACATGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90308 lncRNA upstream 805 2436442 ~ 2436843 (+) True G79290
TU90209 lncRNA upstream 17541 2419521 ~ 2420107 (+) True G79194
TU90199 lncRNA upstream 52460 2371730 ~ 2385188 (+) True G79185
TU90259 lncRNA upstream 120705 2316730 ~ 2316943 (+) True G79241
TU90249 lncRNA upstream 133953 2303317 ~ 2303695 (+) True G79232
TU90322 lncRNA downstream 19534 2457388 ~ 2457601 (+) True G79303
TU90329 lncRNA downstream 31029 2468883 ~ 2469113 (+) True G79310
TU90208 lncRNA downstream 72431 2513478 ~ 2513855 (+) True G79193
TU90351 lncRNA downstream 88252 2526106 ~ 2526930 (+) True G79332
TU90363 lncRNA downstream 134847 2572701 ~ 2573523 (+) True G79344
CI01000013_02411870_02429950.mRNA mRNA upstream 7691 2410427 ~ 2429957 (+) True CI01000013_02411870_02429950
CI01000013_02409027_02409452.mRNA mRNA upstream 28041 2407306 ~ 2409607 (+) True CI01000013_02409027_02409452
CI01000013_02386700_02394730.mRNA mRNA upstream 42352 2386348 ~ 2395296 (+) True CI01000013_02386700_02394730
CI01000013_02081079_02127936.mRNA mRNA upstream 309379 2080666 ~ 2128269 (+) True CI01000013_02081079_02127936
CI01000013_02033469_02034368.mRNA mRNA upstream 402910 2033115 ~ 2034738 (+) True CI01000013_02033469_02034368
CI01000013_02510121_02510417.mRNA mRNA downstream 72229 2510083 ~ 2510534 (+) False CI01000013_02510121_02510417
CI01000013_02528016_02529126.mRNA mRNA downstream 89594 2527448 ~ 2529246 (+) True CI01000013_02528016_02529126
CI01000013_02656037_02664145.mRNA mRNA downstream 218183 2656037 ~ 2664398 (+) True CI01000013_02656037_02664145
CI01000013_02666598_02669821.mRNA mRNA downstream 228744 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02685665_02686639.mRNA mRNA downstream 244613 2682467 ~ 2686835 (+) True CI01000013_02685665_02686639
TU88574 other upstream 1484679 946521 ~ 952969 (+) True G77695
TU88411 other upstream 1728099 708833 ~ 709549 (+) True G77533
TU90328 other downstream 28911 2466765 ~ 2467171 (+) True G79309
TU91155 other downstream 1146154 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1627079 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2397224 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3618444 6056662 ~ 6056782 (+) True G81681

Expression Profile