RNA id: TU90489


Basic Information

Item Value
RNA id TU90489
length 270
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G79445
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2771082 ~ 2771351 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATGTTATTTTTTACTTAGTACTCTCCTGAGCAAGATATTTACATAAAAGATGTTTACATACAATTCACAAGACAAAAAAATAGCTGAATTTATTCAAATAACCCCATTCATAAGTATGTGAACCATTGATTCTTAATACTGTGTGGTTACCTGGATGATCTACGACTGTTTTTTTGTTTTGTGATGGTTCTTCATGAGTCTCTTGTTTGTTCTGAGCAGTTAAACTGAGCTCTGTTCTTCAGAAAAATCCTCCAGGTCCTGCAGATTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90488 lncRNA upstream 58 2770542 ~ 2771024 (+) True G79444
TU90487 lncRNA upstream 735 2770022 ~ 2770347 (+) True G79443
TU90486 lncRNA upstream 1253 2769477 ~ 2769829 (+) True G79442
TU90485 lncRNA upstream 2006 2768477 ~ 2769076 (+) True G79441
TU90484 lncRNA upstream 3343 2767453 ~ 2767739 (+) True G79440
TU90492 lncRNA downstream 3881 2775232 ~ 2775569 (+) True G79448
TU90500 lncRNA downstream 12070 2783421 ~ 2783654 (+) True G79456
TU90501 lncRNA downstream 13911 2785262 ~ 2785791 (+) True G79457
TU90502 lncRNA downstream 14779 2786130 ~ 2786399 (+) True G79458
TU90503 lncRNA downstream 15625 2786976 ~ 2787413 (+) True G79459
CI01000013_02709871_02711692.mRNA mRNA upstream 58583 2709453 ~ 2712499 (+) True CI01000013_02709871_02711692
CI01000013_02692887_02696848.mRNA mRNA upstream 74062 2692443 ~ 2697020 (+) True CI01000013_02692887_02696848
CI01000013_02685665_02686639.mRNA mRNA upstream 84247 2682467 ~ 2686835 (+) True CI01000013_02685665_02686639
CI01000013_02666598_02669821.mRNA mRNA upstream 101261 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02656037_02664145.mRNA mRNA upstream 106684 2656037 ~ 2664398 (+) True CI01000013_02656037_02664145
CI01000013_02815238_02816664.mRNA mRNA downstream 43829 2815180 ~ 2817323 (+) False CI01000013_02815238_02816664
CI01000013_02859975_02863496.mRNA mRNA downstream 88624 2859975 ~ 2863946 (+) True CI01000013_02859975_02863496
CI01000013_03019688_03044233.mRNA mRNA downstream 248337 3019688 ~ 3044374 (+) True CI01000013_03019688_03044233
CI01000013_03087239_03094115.mRNA mRNA downstream 315888 3087239 ~ 3094458 (+) True CI01000013_03087239_03094115
CI01000013_03121085_03147061.mRNA mRNA downstream 349734 3121085 ~ 3147622 (+) True CI01000013_03121085_03147061
TU90328 other upstream 303911 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 1818113 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2061533 708833 ~ 709549 (+) True G77533
TU91155 other downstream 812657 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1293582 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2063727 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3284947 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 3307211 6079666 ~ 6082367 (+) True G81666

Expression Profile