RNA id: TU90501


Basic Information

Item Value
RNA id TU90501
length 530
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G79457
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2785262 ~ 2785791 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGTGGGTTATCATAGACAGTAAAGGATACATCAATGCTGCAATGACTGCAGGAAGTTACACAAACATCAGATTCGGACATGCCAGCTATTGGAAACAGTCTATATTGTGTACTCTAGTGCAGCTGAAATGCTGCATCCGGGACTGAAAGTTTACGGAATTATGGTTATGCAAGGCTAGTTCTACTAAACCTTGTGCATAATGCTAATACTACTAAACTAGGAGAACATATGTGTGGCATGTAAATCTTAGAAGGCTTTTTGACTCAAATCATCTGCTGTGGAGTAATAATGAGTATGCTCTTGTAAAACGGCATTCATATGCAAATATATTCGGCGCGTGTCCACGTACGCGTGCAAGCGTGCGCTCCGAGGCGTTCCTGCTCATTCCTGACCTGTTGGATCCTGTTCTGACTCACTGGAGACACGCTTCGCCTAATCGAATAATTACTATGTTTTTCTACAACAAAACACTCCACATTCCACACTTTTTTTCTGCTCTGGTGTTATCATACTTGGAAAATACAAGTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90500 lncRNA upstream 1608 2783421 ~ 2783654 (+) True G79456
TU90492 lncRNA upstream 9693 2775232 ~ 2775569 (+) True G79448
TU90489 lncRNA upstream 13911 2771082 ~ 2771351 (+) True G79445
TU90488 lncRNA upstream 14238 2770542 ~ 2771024 (+) True G79444
TU90487 lncRNA upstream 14915 2770022 ~ 2770347 (+) True G79443
TU90502 lncRNA downstream 339 2786130 ~ 2786399 (+) True G79458
TU90503 lncRNA downstream 1185 2786976 ~ 2787413 (+) True G79459
TU90504 lncRNA downstream 3436 2789227 ~ 2790204 (+) True G79460
TU90505 lncRNA downstream 4504 2790295 ~ 2790520 (+) True G79461
TU90506 lncRNA downstream 5014 2790805 ~ 2791171 (+) True G79462
CI01000013_02709871_02711692.mRNA mRNA upstream 72763 2709453 ~ 2712499 (+) True CI01000013_02709871_02711692
CI01000013_02692887_02696848.mRNA mRNA upstream 88242 2692443 ~ 2697020 (+) True CI01000013_02692887_02696848
CI01000013_02685665_02686639.mRNA mRNA upstream 98427 2682467 ~ 2686835 (+) True CI01000013_02685665_02686639
CI01000013_02666598_02669821.mRNA mRNA upstream 115441 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02656037_02664145.mRNA mRNA upstream 120864 2656037 ~ 2664398 (+) True CI01000013_02656037_02664145
CI01000013_02815238_02816664.mRNA mRNA downstream 29389 2815180 ~ 2817323 (+) False CI01000013_02815238_02816664
CI01000013_02859975_02863496.mRNA mRNA downstream 74184 2859975 ~ 2863946 (+) True CI01000013_02859975_02863496
CI01000013_03019688_03044233.mRNA mRNA downstream 233897 3019688 ~ 3044374 (+) True CI01000013_03019688_03044233
CI01000013_03087239_03094115.mRNA mRNA downstream 301448 3087239 ~ 3094458 (+) True CI01000013_03087239_03094115
CI01000013_03121085_03147061.mRNA mRNA downstream 335294 3121085 ~ 3147622 (+) True CI01000013_03121085_03147061
TU90328 other upstream 318091 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 1832293 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2075713 708833 ~ 709549 (+) True G77533
TU91155 other downstream 798217 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1279142 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2049287 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3270507 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 3292771 6079666 ~ 6082367 (+) True G81666

Expression Profile