RNA id: TU90523


Basic Information

Item Value
RNA id TU90523
length 210
lncRNA type inter_gene
GC content 0.30
exon number 2
gene id G79479
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2813171 ~ 2813508 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GATAGATAGATAGATAGATAGATAGATAGATAGATAGAACGATAGAACGAACAACAGACAGACAGATAGGTAGATAGATAGATAGATAGATAGATAGAAAGAAAGAACAATATATACATAGAACGACAGACAGACAGATAGATAGATAAATAGATAGATAGATAGATAGATAGATAGATAGAACAATATATACATAGAACGACAGACAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90522 lncRNA upstream 282 2812687 ~ 2812889 (+) True G79478
TU90512 lncRNA upstream 13709 2797984 ~ 2799462 (+) True G79468
TU90511 lncRNA upstream 16595 2796329 ~ 2796576 (+) True G79467
TU90510 lncRNA upstream 17368 2795091 ~ 2795803 (+) True G79466
TU90509 lncRNA upstream 19286 2793457 ~ 2793885 (+) True G79465
TU90525 lncRNA downstream 2296 2815804 ~ 2816109 (+) True G79481
TU90526 lncRNA downstream 2858 2816366 ~ 2816717 (+) False CI01000013_02815238_02816664
TU90527 lncRNA downstream 3348 2816856 ~ 2817302 (+) True CI01000013_02815238_02816664
TU90528 lncRNA downstream 3917 2817425 ~ 2817690 (+) True G79484
TU90529 lncRNA downstream 4573 2818081 ~ 2818490 (+) True G79485
CI01000013_02709871_02711692.mRNA mRNA upstream 100672 2709453 ~ 2712499 (+) True CI01000013_02709871_02711692
CI01000013_02692887_02696848.mRNA mRNA upstream 116151 2692443 ~ 2697020 (+) True CI01000013_02692887_02696848
CI01000013_02685665_02686639.mRNA mRNA upstream 126336 2682467 ~ 2686835 (+) True CI01000013_02685665_02686639
CI01000013_02666598_02669821.mRNA mRNA upstream 143350 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02656037_02664145.mRNA mRNA upstream 148773 2656037 ~ 2664398 (+) True CI01000013_02656037_02664145
CI01000013_02815238_02816664.mRNA mRNA downstream 1672 2815180 ~ 2817323 (+) False CI01000013_02815238_02816664
CI01000013_02859975_02863496.mRNA mRNA downstream 46467 2859975 ~ 2863946 (+) True CI01000013_02859975_02863496
CI01000013_03019688_03044233.mRNA mRNA downstream 206180 3019688 ~ 3044374 (+) True CI01000013_03019688_03044233
CI01000013_03087239_03094115.mRNA mRNA downstream 273731 3087239 ~ 3094458 (+) True CI01000013_03087239_03094115
CI01000013_03121085_03147061.mRNA mRNA downstream 307577 3121085 ~ 3147622 (+) True CI01000013_03121085_03147061
TU90328 other upstream 346000 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 1860202 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2103622 708833 ~ 709549 (+) True G77533
TU91155 other downstream 770500 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1251425 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2021570 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3242790 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 3265054 6079666 ~ 6082367 (+) True G81666

Expression Profile