RNA id: TU90528


Basic Information

Item Value
RNA id TU90528
length 266
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G79484
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2817425 ~ 2817690 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCACTCATAAAGAGATGGAACACTTTTTCAAAAGTTATTTTTTATAAAAATACAATGTTGTTTGGTTGGTTGTTTTAGGTATTCTTGACAATGTCATAAATCCTGATTCAAATACTAAAAATGATAGCGTGTTTTTTCCAGAAAAAGGATAAAAAATTACCTGAATAGAAACGTGAGGTATGTACAGTAGTATGGAAACCTGTCATGAGGAAATTCTGCGTCCTATTTGCGCACTTATTTTTGAACAGCTCATGTACTCCGAGGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90527 lncRNA upstream 123 2816856 ~ 2817302 (+) True CI01000013_02815238_02816664
TU90526 lncRNA upstream 708 2816366 ~ 2816717 (+) False CI01000013_02815238_02816664
TU90525 lncRNA upstream 1316 2815804 ~ 2816109 (+) True G79481
TU90523 lncRNA upstream 3917 2813171 ~ 2813508 (+) True G79479
TU90522 lncRNA upstream 4536 2812687 ~ 2812889 (+) True G79478
TU90529 lncRNA downstream 391 2818081 ~ 2818490 (+) True G79485
TU90569 lncRNA downstream 7402 2825092 ~ 2825318 (+) True G79523
TU90563 lncRNA downstream 56324 2874014 ~ 2875003 (+) True G79517
TU90588 lncRNA downstream 59273 2876963 ~ 2877788 (+) True G79540
TU90589 lncRNA downstream 60537 2878227 ~ 2878450 (+) True G79541
CI01000013_02815238_02816664.mRNA mRNA upstream 102 2815180 ~ 2817323 (+) False CI01000013_02815238_02816664
CI01000013_02709871_02711692.mRNA mRNA upstream 104926 2709453 ~ 2712499 (+) True CI01000013_02709871_02711692
CI01000013_02692887_02696848.mRNA mRNA upstream 120405 2692443 ~ 2697020 (+) True CI01000013_02692887_02696848
CI01000013_02685665_02686639.mRNA mRNA upstream 130590 2682467 ~ 2686835 (+) True CI01000013_02685665_02686639
CI01000013_02666598_02669821.mRNA mRNA upstream 147604 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02859975_02863496.mRNA mRNA downstream 42285 2859975 ~ 2863946 (+) True CI01000013_02859975_02863496
CI01000013_03019688_03044233.mRNA mRNA downstream 201998 3019688 ~ 3044374 (+) True CI01000013_03019688_03044233
CI01000013_03087239_03094115.mRNA mRNA downstream 269549 3087239 ~ 3094458 (+) True CI01000013_03087239_03094115
CI01000013_03121085_03147061.mRNA mRNA downstream 303395 3121085 ~ 3147622 (+) True CI01000013_03121085_03147061
CI01000013_03186643_03190449.mRNA mRNA downstream 368953 3186643 ~ 3190677 (+) True CI01000013_03186643_03190449
TU90328 other upstream 350254 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 1864456 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2107876 708833 ~ 709549 (+) True G77533
TU91155 other downstream 766318 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1247243 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2017388 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3238608 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 3260872 6079666 ~ 6082367 (+) True G81666

Expression Profile