RNA id: TU90529


Basic Information

Item Value
RNA id TU90529
length 410
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G79485
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 2818081 ~ 2818490 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGACATCTTGAGCTCCTTCTTTCAATCCACTACAGAGCTTGATGCTGATTTTAACGGATCAGTTTCTTCCCCTCTAACGGTTTTTCAGCAGAAAACATCAATTTGTGTTGTTAGGATTCTCTCGGAGTCCTTCTATTCCATGTTGTCTGTAGTAAAGGTGCTATCCGCGCCTCGATGGGGTGAGAAGTTTAATGTGAATGTTTCAGATGTGTCTCCGCTCCACCTCTCACGGGCAGCGCTGCGCAGTTTCAGCCCTCCTCTCCAGAGATCTGCTGCTGGGCAGGATAATAAAATGGTTGTTTAGATTAAAACGCTTCTCTTCTTCACTCGTTTTTCCCCCCGTGCAGTAAAGAATGACCTGTCTTTGGTTTGCCTGTATTGCGGTAGCGTACACTGACACTTCATAGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU90528 lncRNA upstream 391 2817425 ~ 2817690 (+) True G79484
TU90527 lncRNA upstream 779 2816856 ~ 2817302 (+) True CI01000013_02815238_02816664
TU90526 lncRNA upstream 1364 2816366 ~ 2816717 (+) False CI01000013_02815238_02816664
TU90525 lncRNA upstream 1972 2815804 ~ 2816109 (+) True G79481
TU90523 lncRNA upstream 4573 2813171 ~ 2813508 (+) True G79479
TU90569 lncRNA downstream 6602 2825092 ~ 2825318 (+) True G79523
TU90563 lncRNA downstream 55524 2874014 ~ 2875003 (+) True G79517
TU90588 lncRNA downstream 58473 2876963 ~ 2877788 (+) True G79540
TU90589 lncRNA downstream 59737 2878227 ~ 2878450 (+) True G79541
TU90590 lncRNA downstream 60855 2879345 ~ 2880489 (+) True G79542
CI01000013_02815238_02816664.mRNA mRNA upstream 758 2815180 ~ 2817323 (+) False CI01000013_02815238_02816664
CI01000013_02709871_02711692.mRNA mRNA upstream 105582 2709453 ~ 2712499 (+) True CI01000013_02709871_02711692
CI01000013_02692887_02696848.mRNA mRNA upstream 121061 2692443 ~ 2697020 (+) True CI01000013_02692887_02696848
CI01000013_02685665_02686639.mRNA mRNA upstream 131246 2682467 ~ 2686835 (+) True CI01000013_02685665_02686639
CI01000013_02666598_02669821.mRNA mRNA upstream 148260 2666598 ~ 2669821 (+) True CI01000013_02666598_02669821
CI01000013_02859975_02863496.mRNA mRNA downstream 41485 2859975 ~ 2863946 (+) True CI01000013_02859975_02863496
CI01000013_03019688_03044233.mRNA mRNA downstream 201198 3019688 ~ 3044374 (+) True CI01000013_03019688_03044233
CI01000013_03087239_03094115.mRNA mRNA downstream 268749 3087239 ~ 3094458 (+) True CI01000013_03087239_03094115
CI01000013_03121085_03147061.mRNA mRNA downstream 302595 3121085 ~ 3147622 (+) True CI01000013_03121085_03147061
CI01000013_03186643_03190449.mRNA mRNA downstream 368153 3186643 ~ 3190677 (+) True CI01000013_03186643_03190449
TU90328 other upstream 350910 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 1865112 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2108532 708833 ~ 709549 (+) True G77533
TU91155 other downstream 765518 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 1246443 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 2016588 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 3237808 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 3260072 6079666 ~ 6082367 (+) True G81666

Expression Profile