RNA id: TU91080


Basic Information

Item Value
RNA id TU91080
length 303
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G79994
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3389945 ~ 3390326 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCGTAATTCACTGGCACTGGATGGTTTTGTAGCATAACTGTCTTTTGATGGTTTCTTACTTCCCAAGCCTTTCCTCTGTGCGGGAATGGAGGCGTTTTTACACATCCTAATGTAAAAACGCATCTCAAAGTTGCCTTTATTCTCCACAGTGAGAGTCTGTTTTTTACGTGAGCCATACACCAGTGGGCCAAAGTTGATATCATTATTGGGACTGATACTGTATTTGGAGAAAAGTGCCTGGACTGACACTTTGATTGGTATAGTATTAATGGTCTCCCCACCCTCCAGATTGGGCTCAATAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91059 lncRNA upstream 15702 3373928 ~ 3374243 (+) True G79976
TU90988 lncRNA upstream 24052 3365542 ~ 3365893 (+) True G79909
TU90688 lncRNA upstream 187632 3201911 ~ 3202313 (+) True G79639
TU90549 lncRNA upstream 195137 3192354 ~ 3194808 (+) True G79503
TU90674 lncRNA upstream 276878 3112613 ~ 3113067 (+) True G79625
TU91090 lncRNA downstream 21169 3411495 ~ 3412005 (+) True G80003
TU91151 lncRNA downstream 140109 3530435 ~ 3530847 (+) True G80058
TU91133 lncRNA downstream 212037 3602363 ~ 3652575 (+) True G80041
TU91132 lncRNA downstream 316397 3706723 ~ 3708228 (+) True G80040
TU91129 lncRNA downstream 318631 3708957 ~ 3712091 (+) True G80037
CI01000013_03262979_03269729.mRNA mRNA upstream 120063 3262979 ~ 3269882 (+) True CI01000013_03262979_03269729
CI01000013_03241607_03258684.mRNA mRNA upstream 130742 3241607 ~ 3259203 (+) True CI01000013_03241607_03258684
CI01000013_03225714_03236717.mRNA mRNA upstream 152900 3225714 ~ 3237045 (+) True CI01000013_03225714_03236717
CI01000013_03186643_03190449.mRNA mRNA upstream 199268 3186643 ~ 3190677 (+) True CI01000013_03186643_03190449
CI01000013_03121085_03147061.mRNA mRNA upstream 242323 3121085 ~ 3147622 (+) True CI01000013_03121085_03147061
CI01000013_03457529_03463949.mRNA mRNA downstream 67203 3457529 ~ 3465011 (+) True CI01000013_03457529_03463949
CI01000013_03477151_03488842.mRNA mRNA downstream 86714 3477040 ~ 3489333 (+) True CI01000013_03477151_03488842
CI01000013_03493064_03499971.mRNA mRNA downstream 102738 3493064 ~ 3500131 (+) True CI01000013_03493064_03499971
CI01000013_03501267_03503856.mRNA mRNA downstream 110941 3501267 ~ 3504388 (+) True CI01000013_03501267_03503856
CI01000013_03505522_03510594.mRNA mRNA downstream 115196 3505522 ~ 3510717 (+) True CI01000013_03505522_03510594
TU90328 other upstream 922774 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 2436976 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2680396 708833 ~ 709549 (+) True G77533
TU91155 other downstream 193682 3584008 ~ 3584784 (+) True G80062
TU91262 other downstream 674607 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 1444752 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 2665972 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 2688236 6079666 ~ 6082367 (+) True G81666

Expression Profile