Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU91132 |
| length | 1506 |
| lncRNA type | inter_gene |
| GC content | 0.35 |
| exon number | 1 |
| gene id | G80040 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 3706723 ~ 3708228 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU91133 | lncRNA | upstream | 54148 | 3602363 ~ 3652575 (+) | True | G80041 |
| TU91151 | lncRNA | upstream | 175876 | 3530435 ~ 3530847 (+) | True | G80058 |
| TU91090 | lncRNA | upstream | 294718 | 3411495 ~ 3412005 (+) | True | G80003 |
| TU91080 | lncRNA | upstream | 316397 | 3389945 ~ 3390326 (+) | True | G79994 |
| TU91059 | lncRNA | upstream | 332480 | 3373928 ~ 3374243 (+) | True | G79976 |
| TU91129 | lncRNA | downstream | 729 | 3708957 ~ 3712091 (+) | True | G80037 |
| TU91161 | lncRNA | downstream | 4748 | 3712976 ~ 3713187 (+) | True | G80068 |
| TU91162 | lncRNA | downstream | 5069 | 3713297 ~ 3713517 (+) | True | G80069 |
| TU91166 | lncRNA | downstream | 23915 | 3732143 ~ 3740009 (+) | True | G80072 |
| TU91171 | lncRNA | downstream | 32048 | 3740276 ~ 3740559 (+) | True | G80075 |
| CI01000013_03617490_03705093.mRNA | mRNA | upstream | 1630 | 3617490 ~ 3705093 (+) | True | CI01000013_03617490_03705093 |
| CI01000013_03570185_03581155.mRNA | mRNA | upstream | 124994 | 3570089 ~ 3581729 (+) | True | CI01000013_03570185_03581155 |
| CI01000013_03565240_03566364.mRNA | mRNA | upstream | 140172 | 3565136 ~ 3566551 (+) | True | CI01000013_03565240_03566364 |
| CI01000013_03505522_03510594.mRNA | mRNA | upstream | 196006 | 3505522 ~ 3510717 (+) | True | CI01000013_03505522_03510594 |
| CI01000013_03501267_03503856.mRNA | mRNA | upstream | 202335 | 3501267 ~ 3504388 (+) | True | CI01000013_03501267_03503856 |
| CI01000013_03715150_03721616.mRNA | mRNA | downstream | 6922 | 3715150 ~ 3721731 (+) | True | CI01000013_03715150_03721616 |
| CI01000013_03744519_03787129.mRNA | mRNA | downstream | 36291 | 3744519 ~ 3788177 (+) | True | CI01000013_03744519_03787129 |
| CI01000013_03823326_03839656.mRNA | mRNA | downstream | 115098 | 3823326 ~ 3839910 (+) | True | CI01000013_03823326_03839656 |
| CI01000013_03843207_03852634.mRNA | mRNA | downstream | 134979 | 3843207 ~ 3854025 (+) | True | CI01000013_03843207_03852634 |
| CI01000013_03856173_03872356.mRNA | mRNA | downstream | 147945 | 3856173 ~ 3872947 (+) | True | CI01000013_03856173_03872356 |
| TU91155 | other | upstream | 121939 | 3584008 ~ 3584784 (+) | True | G80062 |
| TU90328 | other | upstream | 1239552 | 2466765 ~ 2467171 (+) | True | G79309 |
| TU88574 | other | upstream | 2753754 | 946521 ~ 952969 (+) | True | G77695 |
| TU88411 | other | upstream | 2997174 | 708833 ~ 709549 (+) | True | G77533 |
| TU91262 | other | downstream | 356705 | 4064933 ~ 4065829 (+) | True | CI01000013_04051081_04064651 |
| TU92027 | other | downstream | 1126850 | 4835078 ~ 4836232 (+) | True | G80845 |
| TU92951 | other | downstream | 2348070 | 6056662 ~ 6056782 (+) | True | G81681 |
| TU92936 | other | downstream | 2370334 | 6079666 ~ 6082367 (+) | True | G81666 |
| TU93312 | other | downstream | 3627717 | 7335945 ~ 7338239 (+) | True | G81994 |
