RNA id: TU91161


Basic Information

Item Value
RNA id TU91161
length 212
lncRNA type intronic
GC content 0.31
exon number 1
gene id G80068
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3712976 ~ 3713187 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAAAAGGGTGCTTCTACTAAATACTGAGCAAAGGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGGGAAAAAAATGAACTTAAATGATTTTAGCAAATAGCTGCAATATAACAAAGAGTGAAAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91129 lncRNA upstream 885 3708957 ~ 3712091 (+) True G80037
TU91132 lncRNA upstream 4748 3706723 ~ 3708228 (+) True G80040
TU91133 lncRNA upstream 60401 3602363 ~ 3652575 (+) True G80041
TU91151 lncRNA upstream 182129 3530435 ~ 3530847 (+) True G80058
TU91090 lncRNA upstream 300971 3411495 ~ 3412005 (+) True G80003
TU91162 lncRNA downstream 110 3713297 ~ 3713517 (+) True G80069
TU91166 lncRNA downstream 18956 3732143 ~ 3740009 (+) True G80072
TU91171 lncRNA downstream 27089 3740276 ~ 3740559 (+) True G80075
TU91177 lncRNA downstream 79480 3792667 ~ 3792881 (+) True G80081
TU91179 lncRNA downstream 79817 3793004 ~ 3793400 (+) True G80083
CI01000013_03617490_03705093.mRNA mRNA upstream 7883 3617490 ~ 3705093 (+) True CI01000013_03617490_03705093
CI01000013_03570185_03581155.mRNA mRNA upstream 131247 3570089 ~ 3581729 (+) True CI01000013_03570185_03581155
CI01000013_03565240_03566364.mRNA mRNA upstream 146425 3565136 ~ 3566551 (+) True CI01000013_03565240_03566364
CI01000013_03505522_03510594.mRNA mRNA upstream 202259 3505522 ~ 3510717 (+) True CI01000013_03505522_03510594
CI01000013_03501267_03503856.mRNA mRNA upstream 208588 3501267 ~ 3504388 (+) True CI01000013_03501267_03503856
CI01000013_03715150_03721616.mRNA mRNA downstream 1963 3715150 ~ 3721731 (+) True CI01000013_03715150_03721616
CI01000013_03744519_03787129.mRNA mRNA downstream 31332 3744519 ~ 3788177 (+) True CI01000013_03744519_03787129
CI01000013_03823326_03839656.mRNA mRNA downstream 110139 3823326 ~ 3839910 (+) True CI01000013_03823326_03839656
CI01000013_03843207_03852634.mRNA mRNA downstream 130020 3843207 ~ 3854025 (+) True CI01000013_03843207_03852634
CI01000013_03856173_03872356.mRNA mRNA downstream 142986 3856173 ~ 3872947 (+) True CI01000013_03856173_03872356
TU91155 other upstream 128192 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 1245805 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 2760007 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3003427 708833 ~ 709549 (+) True G77533
TU91262 other downstream 351746 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 1121891 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 2343111 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 2365375 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 3622758 7335945 ~ 7338239 (+) True G81994

Expression Profile