RNA id: TU91179


Basic Information

Item Value
RNA id TU91179
length 397
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G80083
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3793004 ~ 3793400 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAACAGTTCAATTAACCCTAATTGATGAAGTGTGCAGCTTTTTGCTCCTCTTGATGGAAATAACATCACAACATTTATTTCAATCAAGAGGTGCATCAATTTTCGGTCAAGATCTTGTATTGACAATGCCGAGTCGAGCACTCTGTAAAGTCTACTCCAGCACATCCCAAAGACTTTCAATGAATTTAAGGTCTGGACTCAGAAGTGCCAATTTATGTGTGAAAATGATTCTTCATGCTCCCTCCCAACCATTCTTTCACAGTTTGAGCCTGATGAATCTTGACATTGTCATCCTGGAATATGGCCATGATACATCTTCCTACATGGTTGTTTAAGCACTCCATCAATTAGGGTTAGAAGAAGTGTTGCCAAACATATAACATGCTAGAAACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91177 lncRNA upstream 123 3792667 ~ 3792881 (+) True G80081
TU91171 lncRNA upstream 52445 3740276 ~ 3740559 (+) True G80075
TU91166 lncRNA upstream 52995 3732143 ~ 3740009 (+) True G80072
TU91162 lncRNA upstream 79487 3713297 ~ 3713517 (+) True G80069
TU91161 lncRNA upstream 79817 3712976 ~ 3713187 (+) True G80068
TU91183 lncRNA downstream 11815 3805215 ~ 3805470 (+) True G80087
TU91184 lncRNA downstream 12654 3806054 ~ 3806715 (+) True G80088
TU91247 lncRNA downstream 133770 3927170 ~ 3927724 (+) True G80143
TU91248 lncRNA downstream 134922 3928322 ~ 3928550 (+) True G80144
TU91207 lncRNA downstream 153404 3946804 ~ 3948697 (+) True G80105
CI01000013_03744519_03787129.mRNA mRNA upstream 4827 3744519 ~ 3788177 (+) True CI01000013_03744519_03787129
CI01000013_03715150_03721616.mRNA mRNA upstream 71273 3715150 ~ 3721731 (+) True CI01000013_03715150_03721616
CI01000013_03617490_03705093.mRNA mRNA upstream 87911 3617490 ~ 3705093 (+) True CI01000013_03617490_03705093
CI01000013_03570185_03581155.mRNA mRNA upstream 211275 3570089 ~ 3581729 (+) True CI01000013_03570185_03581155
CI01000013_03565240_03566364.mRNA mRNA upstream 226453 3565136 ~ 3566551 (+) True CI01000013_03565240_03566364
CI01000013_03823326_03839656.mRNA mRNA downstream 29926 3823326 ~ 3839910 (+) True CI01000013_03823326_03839656
CI01000013_03843207_03852634.mRNA mRNA downstream 49807 3843207 ~ 3854025 (+) True CI01000013_03843207_03852634
CI01000013_03856173_03872356.mRNA mRNA downstream 62773 3856173 ~ 3872947 (+) True CI01000013_03856173_03872356
CI01000013_03885988_03895027.mRNA mRNA downstream 92588 3885988 ~ 3895027 (+) True CI01000013_03885988_03895027
CI01000013_03902606_03908849.mRNA mRNA downstream 109206 3902606 ~ 3909058 (+) True CI01000013_03902606_03908849
TU91155 other upstream 208220 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 1325833 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 2840035 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3083455 708833 ~ 709549 (+) True G77533
TU91262 other downstream 271533 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 1041678 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 2262898 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 2285162 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 3542545 7335945 ~ 7338239 (+) True G81994

Expression Profile