RNA id: TU91642


Basic Information

Item Value
RNA id TU91642
length 216
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G80505
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4126914 ~ 4127129 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAACATGTAAGTAACTGTGTTAATTCTAATGCCTGATCTGATATGTAATGATTCATGTACTGTCAGATGTTCTTTGTCTATGTGTCAGTAAATCAAACCAGTGACTAAACGGACAACTTCACGTTGTTTCTCTTAGTAGGATGAAAATAATCTGTTATTTAAATGGTGATTATATATAGAAAATGATCAAAGAACGCTCTCTTTACAATCGCTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91630 lncRNA upstream 10532 4116159 ~ 4116382 (+) True G80493
TU91288 lncRNA upstream 32051 4091933 ~ 4094863 (+) True G80180
TU91281 lncRNA upstream 48538 4072562 ~ 4078376 (+) True G80175
TU91280 lncRNA upstream 64556 4062088 ~ 4062358 (+) True G80174
TU91279 lncRNA upstream 64883 4061647 ~ 4062031 (+) False CI01000013_04051081_04064651
TU91656 lncRNA downstream 56543 4183672 ~ 4183892 (+) True G80518
TU91643 lncRNA downstream 79008 4206137 ~ 4206711 (+) False G80506
TU91644 lncRNA downstream 79008 4206137 ~ 4206711 (+) True G80506
TU91682 lncRNA downstream 91519 4218648 ~ 4219031 (+) True G80529
TU91650 lncRNA downstream 96324 4223453 ~ 4224034 (+) True G80512
CI01000013_04084679_04088148.mRNA mRNA upstream 37292 4083814 ~ 4089622 (+) False CI01000013_04084679_04088148
CI01000013_04051081_04064651.mRNA mRNA upstream 61745 4050837 ~ 4065169 (+) False CI01000013_04051081_04064651
CI01000013_03952621_03964132.mRNA mRNA upstream 162680 3952621 ~ 3964234 (+) False CI01000013_03952621_03964132
CI01000013_03949848_03950925.mRNA mRNA upstream 175621 3949848 ~ 3951293 (+) True CI01000013_03949848_03950925
CI01000013_03937929_03938255.mRNA mRNA upstream 188653 3937929 ~ 3938261 (+) True CI01000013_03937929_03938255
CI01000013_04316134_04317091.mRNA mRNA downstream 189005 4316134 ~ 4317198 (+) True CI01000013_04316134_04317091
CI01000013_04344339_04347938.mRNA mRNA downstream 217210 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04425884_04426805.mRNA mRNA downstream 298619 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04505188_04527744.mRNA mRNA downstream 378016 4505145 ~ 4527872 (+) True CI01000013_04505188_04527744
CI01000013_04542059_04550082.mRNA mRNA downstream 414930 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
TU91262 other upstream 61085 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 542130 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 1659743 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3173945 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3417365 708833 ~ 709549 (+) True G77533
TU92027 other downstream 707949 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1929169 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1951433 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 3208816 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3901209 8028338 ~ 8041343 (+) True G82168

Expression Profile