RNA id: TU91644


Basic Information

Item Value
RNA id TU91644
length 498
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G80506
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4206137 ~ 4206711 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAAGGACAATTTATTGACTGACATGTTTCTCAAAGAAAAAAAAAAAAAGTTAAAACAATGCAGCATTTCAACTATACATGAGCAGGTTCTGTTTATCAATATTACATAAACCAAAAATATGGATCAATAAAAAGAGCAAAAACCAGCAGCTTTCCAAAGAGATTTAATCTAATTCCTTATCTGGAATACCAGACATTATCCTTAGATTACTGAACCAAATTAACCAATATCGACTGATGTTGTGAGCACTAAAATCTTCCACAAGACTGATGAATGGATTTTAAATAAAAATAAAATGAGGATCAGAACGTAGCACCAAACATCCTCACTGGCTTTGTCCTCAGACAGCTTTGCGATGATATTCTGGAGGTGCAACCTCATAGTCACTTGCACAGAACAGACATGACGAATTCTTCACCAAATACCTAAAAAAAATCTTGCAGGTAGCTAAGAAGCAGGGCTAGACTCTTCTCGTCTAGAGGTGTGTAAGCCAGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91656 lncRNA upstream 22245 4183672 ~ 4183892 (+) True G80518
TU91642 lncRNA upstream 79008 4126914 ~ 4127129 (+) True G80505
TU91630 lncRNA upstream 89755 4116159 ~ 4116382 (+) True G80493
TU91288 lncRNA upstream 111274 4091933 ~ 4094863 (+) True G80180
TU91281 lncRNA upstream 127761 4072562 ~ 4078376 (+) True G80175
TU91682 lncRNA downstream 11937 4218648 ~ 4219031 (+) True G80529
TU91650 lncRNA downstream 16742 4223453 ~ 4224034 (+) True G80512
TU91782 lncRNA downstream 205583 4412294 ~ 4412508 (+) True G80614
TU91784 lncRNA downstream 206386 4413097 ~ 4413304 (+) True G80616
TU91774 lncRNA downstream 209550 4416261 ~ 4444625 (+) True G80607
CI01000013_04084679_04088148.mRNA mRNA upstream 116515 4083814 ~ 4089622 (+) False CI01000013_04084679_04088148
CI01000013_04051081_04064651.mRNA mRNA upstream 140968 4050837 ~ 4065169 (+) False CI01000013_04051081_04064651
CI01000013_03952621_03964132.mRNA mRNA upstream 241903 3952621 ~ 3964234 (+) False CI01000013_03952621_03964132
CI01000013_03949848_03950925.mRNA mRNA upstream 254844 3949848 ~ 3951293 (+) True CI01000013_03949848_03950925
CI01000013_03937929_03938255.mRNA mRNA upstream 267876 3937929 ~ 3938261 (+) True CI01000013_03937929_03938255
CI01000013_04316134_04317091.mRNA mRNA downstream 109423 4316134 ~ 4317198 (+) True CI01000013_04316134_04317091
CI01000013_04344339_04347938.mRNA mRNA downstream 137628 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04425884_04426805.mRNA mRNA downstream 219037 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04505188_04527744.mRNA mRNA downstream 298434 4505145 ~ 4527872 (+) True CI01000013_04505188_04527744
CI01000013_04542059_04550082.mRNA mRNA downstream 335348 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
TU91262 other upstream 140308 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 621353 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 1738966 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3253168 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3496588 708833 ~ 709549 (+) True G77533
TU92027 other downstream 628367 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1849587 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1871851 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 3129234 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3821627 8028338 ~ 8041343 (+) True G82168

Expression Profile