RNA id: TU91782


Basic Information

Item Value
RNA id TU91782
length 215
lncRNA type antisense_over
GC content 0.55
exon number 1
gene id G80614
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4412294 ~ 4412508 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTGCTGGCCCTCACCAGCTCATAGCAGCTTAAGACATCTTTGGCAGCGAGAGCGCTCTGAAACCCTGTTAATCAATACCATCCCTGAGGTAGCGGCACACTCGCAAAGCTGCTTACATGGCTTTTCCGTTTCTCCTCCTCCTTTTCTTTCTCCCCCATCCGTCCCTCTCTTACTCACTCTGCGCTGGAGTCGCTGAGGAGCAGGGCGCGTTCCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91650 lncRNA upstream 188260 4223453 ~ 4224034 (+) True G80512
TU91682 lncRNA upstream 193263 4218648 ~ 4219031 (+) True G80529
TU91643 lncRNA upstream 205583 4206137 ~ 4206711 (+) False G80506
TU91644 lncRNA upstream 205583 4206137 ~ 4206711 (+) True G80506
TU91656 lncRNA upstream 228402 4183672 ~ 4183892 (+) True G80518
TU91784 lncRNA downstream 589 4413097 ~ 4413304 (+) True G80616
TU91774 lncRNA downstream 3753 4416261 ~ 4444625 (+) True G80607
TU91952 lncRNA downstream 50247 4462755 ~ 4463021 (+) True G80775
TU91989 lncRNA downstream 104647 4517155 ~ 4517368 (+) True G80812
TU91991 lncRNA downstream 108700 4521208 ~ 4521446 (+) True G80814
CI01000013_04344339_04347938.mRNA mRNA upstream 64211 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04316134_04317091.mRNA mRNA upstream 95096 4316134 ~ 4317198 (+) True CI01000013_04316134_04317091
CI01000013_04084679_04088148.mRNA mRNA upstream 322672 4083814 ~ 4089622 (+) False CI01000013_04084679_04088148
CI01000013_04051081_04064651.mRNA mRNA upstream 347125 4050837 ~ 4065169 (+) False CI01000013_04051081_04064651
CI01000013_03952621_03964132.mRNA mRNA upstream 448060 3952621 ~ 3964234 (+) False CI01000013_03952621_03964132
CI01000013_04425884_04426805.mRNA mRNA downstream 13240 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04505188_04527744.mRNA mRNA downstream 92637 4505145 ~ 4527872 (+) True CI01000013_04505188_04527744
CI01000013_04542059_04550082.mRNA mRNA downstream 129551 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
CI01000013_04612468_04618550.mRNA mRNA downstream 199546 4612054 ~ 4619000 (+) True CI01000013_04612468_04618550
CI01000013_04657029_04672057.mRNA mRNA downstream 244295 4656803 ~ 4672742 (+) True CI01000013_04657029_04672057
TU91262 other upstream 346465 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 827510 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 1945123 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3459325 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3702745 708833 ~ 709549 (+) True G77533
TU92027 other downstream 422570 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1643790 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1666054 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2923437 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3615830 8028338 ~ 8041343 (+) True G82168

Expression Profile