RNA id: TU91784


Basic Information

Item Value
RNA id TU91784
length 208
lncRNA type intronic
GC content 0.39
exon number 1
gene id G80616
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4413097 ~ 4413304 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTTTTTTTGACATTAAAATCTTCTCTAGTTCATTTCTTTAGTTCAGTCCATCGAGGACAGATACAAGTTAAAGCATGAACACACTGGATAGCTGCTTTATAGTAGAAACTGAAGTTGTACTTCTAATTTAAAGTGAAGCACATGGTTCCACATCAAAGAACTAGCGGCGACGAAAGCTGACTGTGTTGTCGCCTCGTCGGCTTCATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91782 lncRNA upstream 589 4412294 ~ 4412508 (+) True G80614
TU91650 lncRNA upstream 189063 4223453 ~ 4224034 (+) True G80512
TU91682 lncRNA upstream 194066 4218648 ~ 4219031 (+) True G80529
TU91643 lncRNA upstream 206386 4206137 ~ 4206711 (+) False G80506
TU91644 lncRNA upstream 206386 4206137 ~ 4206711 (+) True G80506
TU91774 lncRNA downstream 2957 4416261 ~ 4444625 (+) True G80607
TU91952 lncRNA downstream 49451 4462755 ~ 4463021 (+) True G80775
TU91989 lncRNA downstream 103851 4517155 ~ 4517368 (+) True G80812
TU91991 lncRNA downstream 107904 4521208 ~ 4521446 (+) True G80814
TU91992 lncRNA downstream 109114 4522418 ~ 4522651 (+) True G80815
CI01000013_04344339_04347938.mRNA mRNA upstream 65014 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04316134_04317091.mRNA mRNA upstream 95899 4316134 ~ 4317198 (+) True CI01000013_04316134_04317091
CI01000013_04084679_04088148.mRNA mRNA upstream 323475 4083814 ~ 4089622 (+) False CI01000013_04084679_04088148
CI01000013_04051081_04064651.mRNA mRNA upstream 347928 4050837 ~ 4065169 (+) False CI01000013_04051081_04064651
CI01000013_03952621_03964132.mRNA mRNA upstream 448863 3952621 ~ 3964234 (+) False CI01000013_03952621_03964132
CI01000013_04425884_04426805.mRNA mRNA downstream 12444 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04505188_04527744.mRNA mRNA downstream 91841 4505145 ~ 4527872 (+) True CI01000013_04505188_04527744
CI01000013_04542059_04550082.mRNA mRNA downstream 128755 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
CI01000013_04612468_04618550.mRNA mRNA downstream 198750 4612054 ~ 4619000 (+) True CI01000013_04612468_04618550
CI01000013_04657029_04672057.mRNA mRNA downstream 243499 4656803 ~ 4672742 (+) True CI01000013_04657029_04672057
TU91262 other upstream 347268 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 828313 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 1945926 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3460128 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3703548 708833 ~ 709549 (+) True G77533
TU92027 other downstream 421774 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1642994 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1665258 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2922641 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3615034 8028338 ~ 8041343 (+) True G82168

Expression Profile