RNA id: TU91989


Basic Information

Item Value
RNA id TU91989
length 214
lncRNA type intronic
GC content 0.37
exon number 1
gene id G80812
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4517155 ~ 4517368 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCTCTGTAGTCCGATTTAGCCACTTGTTAGCAACCGTCATTTTCAAGACATGTAACAGCTTAAAAAATCACGGGTAGGTTAATACTGATGTATTTTATGTTGTAGAGTAAAATGTGGAAGTATCTTGAGTTTGTGTTAACCACGGACCTTATTTCAGCCATTTAACCAAAAACCTATTAAAAAAACCCACTGACTTTTGGACGATGGAACTGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91952 lncRNA upstream 54134 4462755 ~ 4463021 (+) True G80775
TU91774 lncRNA upstream 72530 4416261 ~ 4444625 (+) True G80607
TU91784 lncRNA upstream 103851 4413097 ~ 4413304 (+) True G80616
TU91782 lncRNA upstream 104647 4412294 ~ 4412508 (+) True G80614
TU91650 lncRNA upstream 293121 4223453 ~ 4224034 (+) True G80512
TU91991 lncRNA downstream 3840 4521208 ~ 4521446 (+) True G80814
TU91992 lncRNA downstream 5050 4522418 ~ 4522651 (+) True G80815
TU91994 lncRNA downstream 8009 4525377 ~ 4525649 (+) True G80817
TU91995 lncRNA downstream 13000 4530368 ~ 4530615 (+) True G80818
TU92006 lncRNA downstream 45869 4563237 ~ 4564657 (+) True G80828
CI01000013_04425884_04426805.mRNA mRNA upstream 90145 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04344339_04347938.mRNA mRNA upstream 169072 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04316134_04317091.mRNA mRNA upstream 199957 4316134 ~ 4317198 (+) True CI01000013_04316134_04317091
CI01000013_04084679_04088148.mRNA mRNA upstream 427533 4083814 ~ 4089622 (+) False CI01000013_04084679_04088148
CI01000013_04051081_04064651.mRNA mRNA upstream 451986 4050837 ~ 4065169 (+) False CI01000013_04051081_04064651
CI01000013_04542059_04550082.mRNA mRNA downstream 24691 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
CI01000013_04612468_04618550.mRNA mRNA downstream 94686 4612054 ~ 4619000 (+) True CI01000013_04612468_04618550
CI01000013_04657029_04672057.mRNA mRNA downstream 139435 4656803 ~ 4672742 (+) True CI01000013_04657029_04672057
CI01000013_04673313_04707104.mRNA mRNA downstream 155848 4673216 ~ 4707470 (+) True CI01000013_04673313_04707104
CI01000013_04720501_04724747.mRNA mRNA downstream 203133 4720501 ~ 4724940 (+) True CI01000013_04720501_04724747
TU91262 other upstream 451326 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 932371 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 2049984 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3564186 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3807606 708833 ~ 709549 (+) True G77533
TU92027 other downstream 317710 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1538930 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1561194 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2818577 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3510970 8028338 ~ 8041343 (+) True G82168

Expression Profile