RNA id: TU91991


Basic Information

Item Value
RNA id TU91991
length 239
lncRNA type intronic
GC content 0.35
exon number 1
gene id G80814
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4521208 ~ 4521446 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTTGAGTGTGTGCATGAGTTTTAGGGGAATTACTGCTTCAGGAGTGAGGCCATGTCACAAGGAGATGTGACGAATGTTAATGGGGAAGAGAGAAAAACCTAGTGGTCCCACTAAAAGGAATGTATGAATTTGATTTAGATAAGAGCAGCTATATTGTCAGAGGAAGTCTGATACACTAGGGTTTGATACACTACACTGTAAAAAAAAAAAAAAAAAGAAAGAAAAAAAATTAAAAAGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91989 lncRNA upstream 3840 4517155 ~ 4517368 (+) True G80812
TU91952 lncRNA upstream 58187 4462755 ~ 4463021 (+) True G80775
TU91774 lncRNA upstream 76583 4416261 ~ 4444625 (+) True G80607
TU91784 lncRNA upstream 107904 4413097 ~ 4413304 (+) True G80616
TU91782 lncRNA upstream 108700 4412294 ~ 4412508 (+) True G80614
TU91992 lncRNA downstream 972 4522418 ~ 4522651 (+) True G80815
TU91994 lncRNA downstream 3931 4525377 ~ 4525649 (+) True G80817
TU91995 lncRNA downstream 8922 4530368 ~ 4530615 (+) True G80818
TU92006 lncRNA downstream 41791 4563237 ~ 4564657 (+) True G80828
TU92005 lncRNA downstream 43719 4565165 ~ 4565347 (+) True G80827
CI01000013_04425884_04426805.mRNA mRNA upstream 94198 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04344339_04347938.mRNA mRNA upstream 173125 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04316134_04317091.mRNA mRNA upstream 204010 4316134 ~ 4317198 (+) True CI01000013_04316134_04317091
CI01000013_04084679_04088148.mRNA mRNA upstream 431586 4083814 ~ 4089622 (+) False CI01000013_04084679_04088148
CI01000013_04051081_04064651.mRNA mRNA upstream 456039 4050837 ~ 4065169 (+) False CI01000013_04051081_04064651
CI01000013_04542059_04550082.mRNA mRNA downstream 20613 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
CI01000013_04612468_04618550.mRNA mRNA downstream 90608 4612054 ~ 4619000 (+) True CI01000013_04612468_04618550
CI01000013_04657029_04672057.mRNA mRNA downstream 135357 4656803 ~ 4672742 (+) True CI01000013_04657029_04672057
CI01000013_04673313_04707104.mRNA mRNA downstream 151770 4673216 ~ 4707470 (+) True CI01000013_04673313_04707104
CI01000013_04720501_04724747.mRNA mRNA downstream 199055 4720501 ~ 4724940 (+) True CI01000013_04720501_04724747
TU91262 other upstream 455379 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 936424 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 2054037 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3568239 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3811659 708833 ~ 709549 (+) True G77533
TU92027 other downstream 313632 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1534852 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1557116 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2814499 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3506892 8028338 ~ 8041343 (+) True G82168

Expression Profile