RNA id: TU92006



Basic Information


Item Value
RNA id TU92006
length 1421
lncRNA type intronic
GC content 0.33
exon number 1
gene id G80828
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4563237 ~ 4564657 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATATTGTACCTATAAAATCAAAGGCAGTGTATAGATACTGAAAGGATATTGAACTATATATATATATAGTCTCTTTTGCTCACCAAGGCTGCATTATTTGATACAAAAAATACAGTAAAAACAGTAATATTGTGAAATATTATTCCAATTTAAAATAATTGTTTTCTATTTTAATATATTTTACAATTTAATTTATTCCTGTGATGGCAAAGCTGAATTTTCAGTATCATTAATCCAGTCTTAAGTGTCACATGATCCTTCAGAAATCATTCTAATATGCTGATTTAATGCTCAAGAAACATTTCTTATTATTATCAATGTTAAAAACAGTTGGGCTGCTTAATATTTGGTATCATGGAAACCATGATACATTTTTTTTTCTCAGGATTCTTTGATGAATAGAAAGTAAAAAGAACAGGGTAATTCTGTGTCAACTCAACCAGAGGTACCCAGCTCAAATTTTTGATTTTGTTAATATTTTTTCTGTAGAAAGACAAACATAAATAGTGACGAAACCCAAGATATTAAATGTCACAGATGTGTATTTACTGAATAATCCACTATTTTGTAGAGGGGGTCAAAATGACAATTTTCACCTGAGATTTGGAGCCAAATTAGAGGGGTGTAAAAATGACTTTAGAAAGATGGTAGCATCATTATTTTATTTTTAGATTGGTAGGCCTGTTAGTAAAATCTGTTGACTTTAGCAATCTTGGATTCATTATATGCCAACAGTGACAGTTCAAAAATGGAAAAAAGCACTTCTTGTGTTTTTTTGCCTCAAGTTTGCATACCTGTAAATCAGGAAAGGGCTTTTCACACTTGAAATAGTTAACCCTGGGTCATTTTAAGCCCCTGGTAAACGAAATCCTCCCTTACAAAAAAAGAACTGCAGTATATTGAAGTACAACTGCCGTAAAACTACAGTACAAAGTAGTATAACTGCATTATAATTAAGCACAACCATAGATTTGCAGTATAATGAAGTATAATCACAGTACAACTGCAGTACATTGAAGTTCAACAGCAGTAAAACTGCAGTTGTATTGCAGCTATACTGCAATATTTCTGTTTTTTCGTGTCCAAAAAACTGCAGTTTTCTATATGTAAAAACTGCAATGATCTTTTGTAAGGGCTGGGTTATCTTTATTCACGTTTCACACTGCTAATAGTATACCCAGGGTTAACAGTTAATCCTGGGTATTCATAAACTGACGTTTCACACTGCACATTCCTAAACCCAGGGATAAAGTGCTTATCTGCATATTTGCGGTGCCAGTGTCACTGACTAGACAAACGCAGCACGTGACCTGTTTACATTAAAGGGATAGTTCACCCAAAAATGAAAATGATTTACTCACCCTCAAGTTGTTCCAAACCTGTAAAAATGTCTTTGTTCTGTTGAACACAAAGGAAAATAN

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91995 lncRNA upstream 32622 4530368 ~ 4530615 (+) True G80818
TU91994 lncRNA upstream 37588 4525377 ~ 4525649 (+) True G80817
TU91992 lncRNA upstream 40586 4522418 ~ 4522651 (+) True G80815
TU91991 lncRNA upstream 41791 4521208 ~ 4521446 (+) True G80814
TU91989 lncRNA upstream 45869 4517155 ~ 4517368 (+) True G80812
TU92005 lncRNA downstream 508 4565165 ~ 4565347 (+) True G80827
TU92007 lncRNA downstream 2101 4566758 ~ 4567003 (+) True G80829
TU92008 lncRNA downstream 6541 4571198 ~ 4571553 (+) True G80830
TU92009 lncRNA downstream 7107 4571764 ~ 4572100 (+) True G80831
TU92010 lncRNA downstream 8145 4572802 ~ 4573332 (+) True G80832
CI01000013_04542059_04550082.mRNA mRNA upstream 12930 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
CI01000013_04505188_04527744.mRNA mRNA upstream 35365 4505145 ~ 4527872 (+) True CI01000013_04505188_04527744
CI01000013_04425884_04426805.mRNA mRNA upstream 136227 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04344339_04347938.mRNA mRNA upstream 215154 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04316134_04317091.mRNA mRNA upstream 246039 4316134 ~ 4317198 (+) True CI01000013_04316134_04317091
CI01000013_04612468_04618550.mRNA mRNA downstream 47397 4612054 ~ 4619000 (+) True CI01000013_04612468_04618550
CI01000013_04657029_04672057.mRNA mRNA downstream 92146 4656803 ~ 4672742 (+) True CI01000013_04657029_04672057
CI01000013_04673313_04707104.mRNA mRNA downstream 108559 4673216 ~ 4707470 (+) True CI01000013_04673313_04707104
CI01000013_04720501_04724747.mRNA mRNA downstream 155844 4720501 ~ 4724940 (+) True CI01000013_04720501_04724747
CI01000013_04750261_04754885.mRNA mRNA downstream 185604 4750261 ~ 4756045 (+) True CI01000013_04750261_04754885
TU91262 other upstream 497408 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 978453 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 2096066 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3610268 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3853688 708833 ~ 709549 (+) True G77533
TU92027 other downstream 270421 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1491641 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1513905 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2771288 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3463681 8028338 ~ 8041343 (+) True G82168

Expression Profile