RNA id: TU92005


Basic Information

Item Value
RNA id TU92005
length 183
lncRNA type intronic
GC content 0.33
exon number 1
gene id G80827
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4565165 ~ 4565347 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCATGTTTTTAAATAAAGTTGTTTTCTAAATAAAGTTTGAGGAAGCTTGGTGGTGGTGACGTTGATCCGTGACCATGGTGTGCTGTAGTCCGTTTATAGCCTACTGTTAGCTTTTTATATCTGACGACTTTATTTAGGCTTCAAAATATATAAATGTTGTGTTAACTTGTAAAGATTATCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92006 lncRNA upstream 508 4563237 ~ 4564657 (+) True G80828
TU91995 lncRNA upstream 34550 4530368 ~ 4530615 (+) True G80818
TU91994 lncRNA upstream 39516 4525377 ~ 4525649 (+) True G80817
TU91992 lncRNA upstream 42514 4522418 ~ 4522651 (+) True G80815
TU91991 lncRNA upstream 43719 4521208 ~ 4521446 (+) True G80814
TU92007 lncRNA downstream 1411 4566758 ~ 4567003 (+) True G80829
TU92008 lncRNA downstream 5851 4571198 ~ 4571553 (+) True G80830
TU92009 lncRNA downstream 6417 4571764 ~ 4572100 (+) True G80831
TU92010 lncRNA downstream 7455 4572802 ~ 4573332 (+) True G80832
TU92004 lncRNA downstream 12184 4577531 ~ 4577913 (+) True G80826
CI01000013_04542059_04550082.mRNA mRNA upstream 14858 4542059 ~ 4550307 (+) True CI01000013_04542059_04550082
CI01000013_04505188_04527744.mRNA mRNA upstream 37293 4505145 ~ 4527872 (+) True CI01000013_04505188_04527744
CI01000013_04425884_04426805.mRNA mRNA upstream 138155 4425748 ~ 4427010 (+) True CI01000013_04425884_04426805
CI01000013_04344339_04347938.mRNA mRNA upstream 217082 4344339 ~ 4348083 (+) True CI01000013_04344339_04347938
CI01000013_04316134_04317091.mRNA mRNA upstream 247967 4316134 ~ 4317198 (+) True CI01000013_04316134_04317091
CI01000013_04612468_04618550.mRNA mRNA downstream 46707 4612054 ~ 4619000 (+) True CI01000013_04612468_04618550
CI01000013_04657029_04672057.mRNA mRNA downstream 91456 4656803 ~ 4672742 (+) True CI01000013_04657029_04672057
CI01000013_04673313_04707104.mRNA mRNA downstream 107869 4673216 ~ 4707470 (+) True CI01000013_04673313_04707104
CI01000013_04720501_04724747.mRNA mRNA downstream 155154 4720501 ~ 4724940 (+) True CI01000013_04720501_04724747
CI01000013_04750261_04754885.mRNA mRNA downstream 184914 4750261 ~ 4756045 (+) True CI01000013_04750261_04754885
TU91262 other upstream 499336 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 980381 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 2097994 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3612196 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3855616 708833 ~ 709549 (+) True G77533
TU92027 other downstream 269731 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1490951 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1513215 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2770598 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3462991 8028338 ~ 8041343 (+) True G82168

Expression Profile