RNA id: TU92062


Basic Information

Item Value
RNA id TU92062
length 229
lncRNA type intronic
GC content 0.37
exon number 1
gene id G80879
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4770310 ~ 4770538 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TACAAACATTCTACCAAATATCTTCCTTTGTGTACAGCAGAACAAATAAATTCATACAGGTTTGAAACATCTTGAGGGGGAGTAAATTATGACAGAATTTTCATTTTTGGGTGAACTATCCTTTTAAATACGTTATTAGTCTCTTTTAGGACAATTCTAGATTAGGTCATTTAGGAGAATTCTAAGGGTGAAATTCGGTGCTCCGAAACCCACCCCATCCCCCTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92057 lncRNA upstream 52013 4718083 ~ 4718297 (+) True G80875
TU92013 lncRNA upstream 57781 4709807 ~ 4712529 (+) True G80834
TU92004 lncRNA upstream 192397 4577531 ~ 4577913 (+) True G80826
TU92010 lncRNA upstream 196978 4572802 ~ 4573332 (+) True G80832
TU92009 lncRNA upstream 198210 4571764 ~ 4572100 (+) True G80831
TU92024 lncRNA downstream 45932 4816470 ~ 4818947 (+) True G80842
TU92032 lncRNA downstream 55780 4826318 ~ 4828164 (+) True G80850
TU92076 lncRNA downstream 78901 4849439 ~ 4849797 (+) True G80893
TU92102 lncRNA downstream 148445 4918983 ~ 4919289 (+) True G80919
TU91975 lncRNA downstream 206711 4977249 ~ 4977687 (+) True G80798
CI01000013_04760068_04760352.mRNA mRNA upstream 9936 4760007 ~ 4760374 (+) True CI01000013_04760068_04760352
CI01000013_04750261_04754885.mRNA mRNA upstream 14265 4750261 ~ 4756045 (+) True CI01000013_04750261_04754885
CI01000013_04720501_04724747.mRNA mRNA upstream 45370 4720501 ~ 4724940 (+) True CI01000013_04720501_04724747
CI01000013_04673313_04707104.mRNA mRNA upstream 62840 4673216 ~ 4707470 (+) True CI01000013_04673313_04707104
CI01000013_04657029_04672057.mRNA mRNA upstream 97568 4656803 ~ 4672742 (+) True CI01000013_04657029_04672057
CI01000013_04774039_04780331.mRNA mRNA downstream 3501 4774039 ~ 4780762 (+) True CI01000013_04774039_04780331
CI01000013_04788303_04790895.mRNA mRNA downstream 17765 4788303 ~ 4791025 (+) True CI01000013_04788303_04790895
CI01000013_04805165_04810980.mRNA mRNA downstream 33941 4804479 ~ 4810980 (+) True CI01000013_04805165_04810980
CI01000013_04837614_04840771.mRNA mRNA downstream 67076 4837614 ~ 4841571 (+) True CI01000013_04837614_04840771
CI01000013_04854576_04864881.mRNA mRNA downstream 84038 4854576 ~ 4865227 (+) True CI01000013_04854576_04864881
TU91262 other upstream 704481 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 1185526 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 2303139 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3817341 946521 ~ 952969 (+) True G77695
TU88411 other upstream 4060761 708833 ~ 709549 (+) True G77533
TU92027 other downstream 64540 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 1285760 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1308024 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2565407 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3257800 8028338 ~ 8041343 (+) True G82168

Expression Profile