RNA id: TU92102


Basic Information

Item Value
RNA id TU92102
length 259
lncRNA type intronic
GC content 0.30
exon number 2
gene id G80919
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4918983 ~ 4919289 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCAGAACGAATCAAATTGTTTTTAATCGCTTTTAGACAAATAACAAATACATTATAGCTTAACTACAAGTTTAAAAAAACAGCGCTACACGTTAAAATTAAATAAATTAAACATCGGACCTTAAGAAAAAATAGGCAAGACATATTTGACATCAACATGCATAATTTTTACAATCACCACCAGAATGTCCACCTTCACAATGAATTCCGTTAAACTCTGATCAATTCAACAGTTCTCTTCACGAAACGAAATTAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92076 lncRNA upstream 69186 4849439 ~ 4849797 (+) True G80893
TU92032 lncRNA upstream 90819 4826318 ~ 4828164 (+) True G80850
TU92024 lncRNA upstream 100036 4816470 ~ 4818947 (+) True G80842
TU92062 lncRNA upstream 148445 4770310 ~ 4770538 (+) True G80879
TU92057 lncRNA upstream 200686 4718083 ~ 4718297 (+) True G80875
TU91975 lncRNA downstream 57960 4977249 ~ 4977687 (+) True G80798
TU91972 lncRNA downstream 58691 4977980 ~ 4978800 (+) True G80795
TU92116 lncRNA downstream 85085 5004374 ~ 5004897 (+) True G80933
TU92125 lncRNA downstream 108837 5028126 ~ 5028475 (+) True G80942
TU92129 lncRNA downstream 118295 5037584 ~ 5037832 (+) True G80946
CI01000013_04869003_04877964.mRNA mRNA upstream 40606 4868965 ~ 4878377 (+) True CI01000013_04869003_04877964
CI01000013_04854576_04864881.mRNA mRNA upstream 53756 4854576 ~ 4865227 (+) True CI01000013_04854576_04864881
CI01000013_04837614_04840771.mRNA mRNA upstream 77412 4837614 ~ 4841571 (+) True CI01000013_04837614_04840771
CI01000013_04805165_04810980.mRNA mRNA upstream 108003 4804479 ~ 4810980 (+) True CI01000013_04805165_04810980
CI01000013_04788303_04790895.mRNA mRNA upstream 127958 4788303 ~ 4791025 (+) True CI01000013_04788303_04790895
CI01000013_04943413_04948991.mRNA mRNA downstream 24124 4943413 ~ 4949256 (+) True CI01000013_04943413_04948991
CI01000013_04950930_04976334.mRNA mRNA downstream 31641 4950930 ~ 4976710 (+) True CI01000013_04950930_04976334
CI01000013_04989803_04992613.mRNA mRNA downstream 70245 4989534 ~ 4992888 (+) True CI01000013_04989803_04992613
CI01000013_05246618_05251189.mRNA mRNA downstream 325505 5244794 ~ 5251310 (+) True CI01000013_05246618_05251189
CI01000013_05262407_05267780.mRNA mRNA downstream 342840 5262129 ~ 5267965 (+) True CI01000013_05262407_05267780
TU92027 other upstream 82751 4835078 ~ 4836232 (+) True G80845
TU91262 other upstream 853154 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 1334199 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 2451812 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 3966014 946521 ~ 952969 (+) True G77695
TU92951 other downstream 1137009 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1159273 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2416656 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3109049 8028338 ~ 8041343 (+) True G82168
TU93966 other downstream 4410040 9329329 ~ 9334948 (+) True G82581

Expression Profile