RNA id: TU91975


Basic Information

Item Value
RNA id TU91975
length 439
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G80798
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 4977249 ~ 4977687 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAAAGGGTAGAGATTTGTGAGAAGCACTATTTTTCACACATTGTTCTCGAAACAACCTGTTTCAAAGCTAAAATGTGTATCCACACATCTAGCTAGAGGCTATTTGTAAGTTGCTCTCCCCAAAATGAATAAATGCTGTTTGAGCATCCCGACCAGCAACATTGGCTCAACCAATGACATTAGTTTGGGGTTGGACTAGGTTTGTCAACCAATGGAAGACCGTGAAATGTTGCACAAAGCTGAAAATCATTTTGCAACTTCTTTTGATGACATAAGCCACACAGAATCGACATTTCAGCATTCAATGTTGAGTGAAAATCCTCCCAGGATGTTCATTAGACCAATTTTGCGTTTGCAAACAGCGATGACCTTTTTTTTTGTGGGCGGAGCCTACCTCGTGGCAGAAAATTGACAGTTCTGCAGTAGCAGTCTATGGAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92102 lncRNA upstream 57960 4918983 ~ 4919289 (+) True G80919
TU92076 lncRNA upstream 127452 4849439 ~ 4849797 (+) True G80893
TU92032 lncRNA upstream 149085 4826318 ~ 4828164 (+) True G80850
TU92024 lncRNA upstream 158302 4816470 ~ 4818947 (+) True G80842
TU92062 lncRNA upstream 206711 4770310 ~ 4770538 (+) True G80879
TU91972 lncRNA downstream 293 4977980 ~ 4978800 (+) True G80795
TU92116 lncRNA downstream 26687 5004374 ~ 5004897 (+) True G80933
TU92125 lncRNA downstream 50439 5028126 ~ 5028475 (+) True G80942
TU92129 lncRNA downstream 59897 5037584 ~ 5037832 (+) True G80946
TU92362 lncRNA downstream 133150 5110837 ~ 5111052 (+) True G81152
CI01000013_04950930_04976334.mRNA mRNA upstream 539 4950930 ~ 4976710 (+) True CI01000013_04950930_04976334
CI01000013_04943413_04948991.mRNA mRNA upstream 27993 4943413 ~ 4949256 (+) True CI01000013_04943413_04948991
CI01000013_04916607_04940299.mRNA mRNA upstream 36941 4916313 ~ 4940308 (+) True CI01000013_04916607_04940299
CI01000013_04869003_04877964.mRNA mRNA upstream 98872 4868965 ~ 4878377 (+) True CI01000013_04869003_04877964
CI01000013_04854576_04864881.mRNA mRNA upstream 112022 4854576 ~ 4865227 (+) True CI01000013_04854576_04864881
CI01000013_04989803_04992613.mRNA mRNA downstream 11847 4989534 ~ 4992888 (+) True CI01000013_04989803_04992613
CI01000013_05246618_05251189.mRNA mRNA downstream 267107 5244794 ~ 5251310 (+) True CI01000013_05246618_05251189
CI01000013_05262407_05267780.mRNA mRNA downstream 284442 5262129 ~ 5267965 (+) True CI01000013_05262407_05267780
CI01000013_05402289_05403494.mRNA mRNA downstream 423900 5401587 ~ 5403927 (+) True CI01000013_05402289_05403494
CI01000013_05436977_05445492.mRNA mRNA downstream 459290 5436977 ~ 5445492 (+) True CI01000013_05436977_05445492
TU92027 other upstream 141017 4835078 ~ 4836232 (+) True G80845
TU91262 other upstream 911420 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU91155 other upstream 1392465 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 2510078 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 4024280 946521 ~ 952969 (+) True G77695
TU92951 other downstream 1078611 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 1100875 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 2358258 7335945 ~ 7338239 (+) True G81994
TU93521 other downstream 3050651 8028338 ~ 8041343 (+) True G82168
TU93966 other downstream 4351642 9329329 ~ 9334948 (+) True G82581

Expression Profile