Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU93302 |
| length | 1526 |
| lncRNA type | antisense_over |
| GC content | 0.35 |
| exon number | 4 |
| gene id | G81985 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000013 |
| NCBI id | null |
| chromosome length | 12551977 |
| location | 7190949 ~ 7192986 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU93246 | lncRNA | upstream | 105448 | 6987893 ~ 7085501 (+) | True | G81939 |
| TU93179 | lncRNA | upstream | 285605 | 6905056 ~ 6905344 (+) | True | G81883 |
| TU93221 | lncRNA | upstream | 303128 | 6887493 ~ 6887821 (+) | True | G81920 |
| TU93219 | lncRNA | upstream | 308725 | 6881956 ~ 6882224 (+) | True | G81918 |
| TU93200 | lncRNA | upstream | 327528 | 6863202 ~ 6863421 (+) | True | G81904 |
| TU93335 | lncRNA | downstream | 74108 | 7267094 ~ 7267316 (+) | True | G82010 |
| TU93338 | lncRNA | downstream | 76631 | 7269617 ~ 7269836 (+) | True | G82013 |
| TU93342 | lncRNA | downstream | 82691 | 7275677 ~ 7275887 (+) | True | G82017 |
| TU93371 | lncRNA | downstream | 146743 | 7339729 ~ 7340751 (+) | True | G82045 |
| TU93379 | lncRNA | downstream | 155733 | 7348719 ~ 7352640 (+) | True | G82050 |
| CI01000013_07154745_07159568.mRNA | mRNA | upstream | 31341 | 7154745 ~ 7159608 (+) | True | CI01000013_07154745_07159568 |
| CI01000013_07148102_07150807.mRNA | mRNA | upstream | 39994 | 7148052 ~ 7150955 (+) | True | CI01000013_07148102_07150807 |
| CI01000013_07131096_07141914.mRNA | mRNA | upstream | 48907 | 7130952 ~ 7142042 (+) | True | CI01000013_07131096_07141914 |
| CI01000013_07119401_07124434.mRNA | mRNA | upstream | 66322 | 7119401 ~ 7124627 (+) | True | CI01000013_07119401_07124434 |
| CI01000013_07093361_07101998.mRNA | mRNA | upstream | 88581 | 7093361 ~ 7102368 (+) | True | CI01000013_07093361_07101998 |
| CI01000013_07277014_07279249.mRNA | mRNA | downstream | 83624 | 7276610 ~ 7279319 (+) | True | CI01000013_07277014_07279249 |
| CI01000013_07286519_07288160.mRNA | mRNA | downstream | 93456 | 7286442 ~ 7288547 (+) | True | CI01000013_07286519_07288160 |
| CI01000013_07375912_07390782.mRNA | mRNA | downstream | 180832 | 7373818 ~ 7391003 (+) | True | CI01000013_07375912_07390782 |
| CI01000013_07765924_07780475.mRNA | mRNA | downstream | 571699 | 7764685 ~ 7780716 (+) | True | CI01000013_07765924_07780475 |
| CI01000013_07791141_07802608.mRNA | mRNA | downstream | 597718 | 7790704 ~ 7802710 (+) | True | CI01000013_07791141_07802608 |
| TU92936 | other | upstream | 1108582 | 6079666 ~ 6082367 (+) | True | G81666 |
| TU92951 | other | upstream | 1131453 | 6056662 ~ 6056782 (+) | True | G81681 |
| TU92027 | other | upstream | 2354717 | 4835078 ~ 4836232 (+) | True | G80845 |
| TU91262 | other | upstream | 3125120 | 4064933 ~ 4065829 (+) | True | CI01000013_04051081_04064651 |
| TU91155 | other | upstream | 3606165 | 3584008 ~ 3584784 (+) | True | G80062 |
| TU93312 | other | downstream | 142959 | 7335945 ~ 7338239 (+) | True | G81994 |
| TU93521 | other | downstream | 835352 | 8028338 ~ 8041343 (+) | True | G82168 |
| TU93966 | other | downstream | 2136343 | 9329329 ~ 9334948 (+) | True | G82581 |
| TU95556 | other | downstream | 2408625 | 9601611 ~ 9602235 (+) | False | G84005 |
| TU95558 | other | downstream | 2408625 | 9601611 ~ 9602184 (+) | False | G84005 |
