RNA id: TU93710


Basic Information

Item Value
RNA id TU93710
length 418
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G82337
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7951851 ~ 7952268 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTGAGTACCATGTTTTACCATGCCTAATATCGATCTAGCTTACTGCAGTGTGCAACAAGTGTCTCATAGTAGTTGCTGAGTGAACACACAGAGTAGCATTATAACAACTTTCAACACACAAATGTGTCTAATATGATAAAACAGCGCTGTGTTACCCCACATACATGTGACCTAATGAAGCAGAAGCGCTCATCTGTGGCATAATAAAAGCTCCACTGCTCTCGAGCCATGTGTCGCACTTGTCTCTCATTAGCAATCGCTCTATCGGCCTCGTTTTGCTCCAAAAGCTTTCACCCACACCCTGCTCCATACTACAGTAATGTTAATAAATCTTCAATAAATTAGCTCATCCATGAATATGATTTCTGCCCAAGTCTCGTCGGATTCTTTTCCACCGGCTGTAGACGTGAAGAAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93642 lncRNA upstream 129840 7821700 ~ 7822011 (+) True G82286
TU93417 lncRNA upstream 146305 7661091 ~ 7805546 (+) True G82079
TU93408 lncRNA upstream 486943 7463581 ~ 7464908 (+) True G82076
TU93405 lncRNA upstream 503287 7448288 ~ 7448564 (+) True G82073
TU93401 lncRNA upstream 509847 7441787 ~ 7442004 (+) True G82069
TU93711 lncRNA downstream 173 7952441 ~ 7952655 (+) True G82338
TU93712 lncRNA downstream 500 7952768 ~ 7952996 (+) True G82339
TU93490 lncRNA downstream 58993 8011261 ~ 8059825 (+) False G82146
TU93487 lncRNA downstream 59925 8012193 ~ 8059825 (+) True G82146
TU93508 lncRNA downstream 62985 8015253 ~ 8016366 (+) True G82157
CI01000013_07929832_07935997.mRNA mRNA upstream 15854 7929832 ~ 7935997 (+) True CI01000013_07929832_07935997
CI01000013_07791141_07802608.mRNA mRNA upstream 149141 7790704 ~ 7802710 (+) True CI01000013_07791141_07802608
CI01000013_07765924_07780475.mRNA mRNA upstream 171135 7764685 ~ 7780716 (+) True CI01000013_07765924_07780475
CI01000013_07375912_07390782.mRNA mRNA upstream 560848 7373818 ~ 7391003 (+) True CI01000013_07375912_07390782
CI01000013_07286519_07288160.mRNA mRNA upstream 663304 7286442 ~ 7288547 (+) True CI01000013_07286519_07288160
CI01000013_07970614_07989626.mRNA mRNA downstream 18346 7970614 ~ 7989756 (+) True CI01000013_07970614_07989626
CI01000013_08013515_08013676.mRNA mRNA downstream 61247 8013515 ~ 8014766 (+) True CI01000013_08013515_08013676
CI01000013_08066408_08071727.mRNA mRNA downstream 112941 8065209 ~ 8071972 (+) True CI01000013_08066408_08071727
CI01000013_08095012_08097899.mRNA mRNA downstream 142744 8095012 ~ 8098533 (+) True CI01000013_08095012_08097899
CI01000013_08101166_08105054.mRNA mRNA downstream 148898 8101166 ~ 8105214 (+) True CI01000013_08101166_08105054
TU93312 other upstream 613612 7335945 ~ 7338239 (+) True G81994
TU92936 other upstream 1869484 6079666 ~ 6082367 (+) True G81666
TU92951 other upstream 1892355 6056662 ~ 6056782 (+) True G81681
TU92027 other upstream 3115619 4835078 ~ 4836232 (+) True G80845
TU91262 other upstream 3886022 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU93521 other downstream 76070 8028338 ~ 8041343 (+) True G82168
TU93966 other downstream 1377061 9329329 ~ 9334948 (+) True G82581
TU95556 other downstream 1649343 9601611 ~ 9602235 (+) False G84005
TU95558 other downstream 1649343 9601611 ~ 9602184 (+) False G84005
TU95773 other downstream 2078340 10030608 ~ 10036793 (+) False G84194

Expression Profile