RNA id: TU94939



Basic Information


Item Value
RNA id TU94939
length 1459
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id G83477
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 7972740 ~ 7974429 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAAAGTGACTCTTTAATGCACAAAAAAGTTCTTGTAGGGTTTAGGGTTGCTAGCTAGTCACTATATTAAGAGTCAACTACAAAGTTTATATGGTATTCTGTTCTCTATATGTTGTAACTTAGAAGCCCTCTGTCAAACATGTTTTGTGTTTGTTTGTGAAAATGTCACTTGATTAATTTAAAGCATCCTTGCAGAAAAAAAAGTTAATTTATCTTAAAAAAAAAAAAAAAAAAAAAACTTGCTAATATTTAGTATAATGTAATATAGTATAAAAAAAATTAAATTCTATTTCAGGAAAAATCATTTATCTGACAAATCCGATGTCCTCAATAAGAAAAATGACTCATAAATACACCCCCCCCCCTTTTTTTCTTTAAAAAAAAAAAAAAAAAAAGTTTAGGGTTGCCAACTTGTCACTTATTGACTTAAATTAAGAGCCCACTGCATAGTTTATTATATTCTGCTCTCTAGATATGATTGGACGACCTCTGTCAATATAAATCTGTTTTGTTGCCTGTTTATTTTTGTCTATCAGACGTAATTTGTAAATACAATCACTTAAAAAAGTAATAGCTCACTTATCAATAAGACACATTATTTGAAGTATTATTGTCCATGACACGTGTTACACGTTACAACGTTTTGGACAGACATACAAGTATGAGCAATAATAGTGATGCATGCCTTAGCAAGCATCCAAATATCTTCCTTTGTGTACAGCAGAACAAAAAAATTTATACAGATTTAGAACAACTTGAGGGTGAGTAAATGATGACAGAATTTTCATTTTTGGGTGAACTATCCCTTTAAGATCAACACTCATATCTAACTAAATTTATAACTAATCTTACCTCTCCAGTTAGATAGGCATGTAAATGTGTGTGACTTACCTCAGCAAGCAGGGTGGAGATAATGTGCAGTGGTGCCTGATGGATGGATTCGTCCTGCAGGGGTGAAGTGAGGGCCATGTCCACCAGGGCCCTGATCTCCTTCAGAACCACATCCCAGCGGCTTGGGTTATTCAGAACCTTGCGGTACTTGTAGATCTTTTTCTGTATATGAATCAGATAACCCAGATTACACACACCTACCTTTTACCAATGCAACCAAGAGTTATGAAAATGGTGCACGTTTTACCGCCATAATGCAACAGTGGTTATATATAACAGTGTAAAGCATGTTGTGAATTTACCCAGAAATGAGTTGTGGTAATCAGGTTTGGGGATTTAGGGTTTGAAGTTCTTATTTTGTTCCATTTTATTGGCCTCATGCATGGATGTTTTTTCAACCACAAGCATTTAAAAAAAAAAAATTCTAAAACACTTTTCACACTCTCACTACTCTTTAAATTTAAAGTTAAATTTGTCTACTAGCAATGTCCAAAAGTTTCTAGGAATATAGTAGAAATAGATGCATTTTTTTAACCTCTTGAACATTTCCACCACATCTCAAAATGTGT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU94937 lncRNA downstream 14684 7956962 ~ 7958056 (-) True G83475
TU94661 lncRNA downstream 72572 7868770 ~ 7900168 (-) True G83211
TU94848 lncRNA downstream 150729 7821700 ~ 7822011 (-) True G83395
TU94846 lncRNA downstream 153375 7819154 ~ 7819365 (-) True G83393
TU94662 lncRNA downstream 173786 7773631 ~ 7798954 (-) True G83212
TU94933 lncRNA upstream 7755 7982184 ~ 7984602 (-) True G83471
TU94927 lncRNA upstream 104385 8078814 ~ 8079209 (-) True G83465
TU95089 lncRNA upstream 476410 8450839 ~ 8451904 (-) True G83620
TU95143 lncRNA upstream 510139 8484568 ~ 8484769 (-) True G83658
TU95147 lncRNA upstream 521614 8496043 ~ 8496249 (-) True G83662
CI01000013_07804879_07805627.mRNA mRNA downstream 167075 7804866 ~ 7805665 (-) True CI01000013_07804879_07805627
CI01000013_07703864_07718313.mRNA mRNA downstream 253667 7703761 ~ 7719073 (-) True CI01000013_07703864_07718313
CI01000013_07641497_07662151.mRNA mRNA downstream 308993 7640917 ~ 7663747 (-) True CI01000013_07641497_07662151
CI01000013_07463570_07636742.mRNA mRNA downstream 335998 7463570 ~ 7636742 (-) True CI01000013_07463570_07636742
CI01000013_07455026_07456463.mRNA mRNA downstream 516234 7454241 ~ 7456506 (-) True CI01000013_07455026_07456463
CI01000013_07989784_08013498.mRNA mRNA upstream 15282 7989711 ~ 8013936 (-) True CI01000013_07989784_08013498
CI01000013_08016159_08020344.mRNA mRNA upstream 41686 8016115 ~ 8020344 (-) True CI01000013_08016159_08020344
CI01000013_08042921_08047883.mRNA mRNA upstream 67781 8042210 ~ 8048460 (-) True CI01000013_08042921_08047883
CI01000013_08059677_08060143.mRNA mRNA upstream 84539 8058968 ~ 8060143 (-) True CI01000013_08059677_08060143
CI01000013_08072726_08076570.mRNA mRNA upstream 98150 8072579 ~ 8077191 (-) True CI01000013_08072726_08076570
TU94655 other downstream 590380 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 2088368 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 2228702 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 3222179 4748809 ~ 4750561 (-) True G81032
TU92144 other downstream 3413837 4556868 ~ 4558903 (-) False G80954
TU95233 other upstream 1332607 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU96930 other upstream 2505432 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 2589030 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 2617775 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 3060603 11035032 ~ 11035466 (-) True G85401

Expression Profile