RNA id: TU94927


Basic Information

Item Value
RNA id TU94927
length 396
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G83465
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8078814 ~ 8079209 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TAATGATAAAGGAGTCCCTTTTAAATACAAGGAAGTTTTGTTACATTATAAAATCCCAGTCACAGCAAGGGAATATGCTATTGTTTCTGGAGCCATCCCTTCTGGGATTGTTATATTTATGAAGTGATTTAATAACCAGTTTTCTCAGATTGTGCCACTTCTTAATGTGTCTGAATAACATTTGTTGGTAAATCATCCCTTACCATAAAGTCAAATAACAGGAGTGTTCATGTTCTGCTCAAGCGTGAGGTTGTCTTTTGTCCTAATGTCATCTTTTATTGAAACGTATAGGTATGTAAACATGTAGGTAACATTAACTGGGATAGAGTGTGGGGCTTTGCCTCAGAAAATTTTTATGTACAATAAAATCAAAGAAGCATCTTATAAAATGATACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94933 lncRNA downstream 94212 7982184 ~ 7984602 (-) True G83471
TU94939 lncRNA downstream 104385 7972740 ~ 7974429 (-) True G83477
TU94937 lncRNA downstream 120758 7956962 ~ 7958056 (-) True G83475
TU94661 lncRNA downstream 178646 7868770 ~ 7900168 (-) True G83211
TU94848 lncRNA downstream 256803 7821700 ~ 7822011 (-) True G83395
TU95089 lncRNA upstream 371630 8450839 ~ 8451904 (-) True G83620
TU95143 lncRNA upstream 405359 8484568 ~ 8484769 (-) True G83658
TU95147 lncRNA upstream 416834 8496043 ~ 8496249 (-) True G83662
TU95148 lncRNA upstream 417226 8496435 ~ 8496691 (-) True G83663
TU95162 lncRNA upstream 449943 8529152 ~ 8529368 (-) True G83677
CI01000013_08072726_08076570.mRNA mRNA downstream 1623 8072579 ~ 8077191 (-) True CI01000013_08072726_08076570
CI01000013_08059677_08060143.mRNA mRNA downstream 18671 8058968 ~ 8060143 (-) True CI01000013_08059677_08060143
CI01000013_08042921_08047883.mRNA mRNA downstream 30354 8042210 ~ 8048460 (-) True CI01000013_08042921_08047883
CI01000013_08016159_08020344.mRNA mRNA downstream 58470 8016115 ~ 8020344 (-) True CI01000013_08016159_08020344
CI01000013_07989784_08013498.mRNA mRNA downstream 64878 7989711 ~ 8013936 (-) True CI01000013_07989784_08013498
CI01000013_08080409_08086491.mRNA mRNA upstream 1151 8080360 ~ 8087554 (-) True CI01000013_08080409_08086491
CI01000013_08090811_08094235.mRNA mRNA upstream 10464 8089673 ~ 8094304 (-) True CI01000013_08090811_08094235
CI01000013_08098898_08099508.mRNA mRNA upstream 19549 8098758 ~ 8099508 (-) True CI01000013_08098898_08099508
CI01000013_08229647_08258878.mRNA mRNA upstream 149963 8229172 ~ 8258878 (-) True CI01000013_08229647_08258878
CI01000013_08308180_08308362.mRNA mRNA upstream 228642 8307851 ~ 8309913 (-) True CI01000013_08308180_08308362
TU94655 other downstream 696454 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 2194442 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 2334776 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 3328253 4748809 ~ 4750561 (-) True G81032
TU92144 other downstream 3519911 4556868 ~ 4558903 (-) False G80954
TU95233 other upstream 1227827 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU96930 other upstream 2400652 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 2484250 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 2512995 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 2955823 11035032 ~ 11035466 (-) True G85401

Expression Profile