RNA id: TU95210


Basic Information

Item Value
RNA id TU95210
length 266
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G83724
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 8713204 ~ 8713469 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATAAGGGGCAAAAATGACCCTGTATATCTTTCATATTCATATAATTTAATATAGTTAACCAATATTAAACAAAGAGCGCCGTTTTTCTCCAAATATCAGCACGATTACAAATGTGATATTGATTTTATACAGCGTACGGTTTAATGAACAAGAACTTAATATCAAGTGACTTACATTTTAGACACCAAATTGCCTGTTTTGCTCTATTTCGCCTACGAAAATAGTTCCACACAGCATTGTTTTGTGTCTCTGAGCAACACTTCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95193 lncRNA downstream 25133 8687827 ~ 8688071 (-) True G83707
TU95192 lncRNA downstream 28109 8684886 ~ 8685095 (-) True G83706
TU95188 lncRNA downstream 35099 8677891 ~ 8678105 (-) True G83702
TU95185 lncRNA downstream 43953 8668995 ~ 8669251 (-) True G83699
TU95181 lncRNA downstream 47396 8665605 ~ 8665808 (-) True G83695
TU95211 lncRNA upstream 712 8714181 ~ 8714464 (-) True G83725
TU95122 lncRNA upstream 3754 8717223 ~ 8819314 (-) True G83641
TU95121 lncRNA upstream 52223 8765692 ~ 8782735 (-) True G83640
TU95296 lncRNA upstream 177827 8891296 ~ 8891501 (-) True G83767
TU95297 lncRNA upstream 180520 8893989 ~ 8894294 (-) True G83768
CI01000013_08616374_08648611.mRNA mRNA downstream 64593 8616204 ~ 8648611 (-) True CI01000013_08616374_08648611
CI01000013_08555865_08573521.mRNA mRNA downstream 139683 8555208 ~ 8573521 (-) False CI01000013_08555865_08573521
CI01000013_08418098_08441411.mRNA mRNA downstream 271453 8417837 ~ 8441751 (-) True CI01000013_08418098_08441411
CI01000013_08311120_08328130.mRNA mRNA downstream 384861 8310985 ~ 8328343 (-) True CI01000013_08311120_08328130
CI01000013_08308180_08308362.mRNA mRNA downstream 403291 8307851 ~ 8309913 (-) True CI01000013_08308180_08308362
CI01000013_08732651_08797549.mRNA mRNA upstream 19182 8732651 ~ 8797549 (-) True CI01000013_08732651_08797549
CI01000013_08950324_08962808.mRNA mRNA upstream 236509 8949978 ~ 8962808 (-) True CI01000013_08950324_08962808
CI01000013_09007324_09008538.mRNA mRNA upstream 293788 9007257 ~ 9008749 (-) True CI01000013_09007324_09008538
CI01000013_09293519_09305846.mRNA mRNA upstream 579664 9293133 ~ 9305846 (-) True CI01000013_09293519_09305846
CI01000013_09309438_09335834.mRNA mRNA upstream 595903 9309372 ~ 9336077 (-) False CI01000013_09309438_09335834
TU94655 other downstream 1330844 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 2828832 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 2969166 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 3962643 4748809 ~ 4750561 (-) True G81032
TU92144 other downstream 4154301 4556868 ~ 4558903 (-) False G80954
TU95233 other upstream 593567 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU96930 other upstream 1766392 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 1849990 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 1878735 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 2321563 11035032 ~ 11035466 (-) True G85401

Expression Profile