RNA id: TU95489


Basic Information

Item Value
RNA id TU95489
length 427
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G83942
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9509525 ~ 9509951 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCTGATTTATACTTCTGCGTCGGACCTATTCTGCGCCGTAGGCTATGCGTCTGTTTTCATTTATACTTCTGCATCGTTGTCGACGTGCATGCAGACCACTAGGAGGCAGTGTCCGCGGTCATGTTGAGGATCAAGGCAACAGCCGAAGAAGAAGCAGCTTGTCATGTACGTTGTCAGAGAAACTGAAACTGTTGTCCCCTGAAACAGTGTGTTTTTTTTTCATTCATATGGAAGTTGAAAACGCTCGCTCTTCTCCGAGTGTTCTGCGCCAGTCTTTTGACCTGAGGGAGGGGTTCTAGCAGACCAATCACAGTGCTTGCGGTCCGCGTAGAATTGACGCGGTGTTACATTTTTGAAGAGGTGCACATCAGGCTACGTCGTAGGTTACGCATGCTACACACAGCCTACGCCGTAGCTACGGCGTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95468 lncRNA downstream 20719 9488567 ~ 9488806 (-) True G83921
TU95431 lncRNA downstream 49372 9452451 ~ 9460153 (-) True G83891
TU95425 lncRNA downstream 69609 9439441 ~ 9439916 (-) True G83888
TU95434 lncRNA downstream 111949 9397286 ~ 9397576 (-) True G83894
TU95281 lncRNA downstream 129902 9311397 ~ 9379623 (-) True G83752
TU95496 lncRNA upstream 10771 9520722 ~ 9520935 (-) True G83949
TU95503 lncRNA upstream 28521 9538472 ~ 9539609 (-) False G83956
TU95504 lncRNA upstream 28521 9538472 ~ 9539609 (-) True G83956
TU95523 lncRNA upstream 36709 9546660 ~ 9547069 (-) True G83975
TU95532 lncRNA upstream 43863 9553814 ~ 9554037 (-) True G83982
CI01000013_09444914_09445539.mRNA mRNA downstream 62972 9444425 ~ 9446553 (-) True CI01000013_09444914_09445539
CI01000013_09336832_09367107.mRNA mRNA downstream 142221 9336572 ~ 9367304 (-) True CI01000013_09336832_09367107
CI01000013_09309438_09335834.mRNA mRNA downstream 173448 9309372 ~ 9336077 (-) False CI01000013_09309438_09335834
CI01000013_09293519_09305846.mRNA mRNA downstream 203679 9293133 ~ 9305846 (-) True CI01000013_09293519_09305846
CI01000013_09007324_09008538.mRNA mRNA downstream 500776 9007257 ~ 9008749 (-) True CI01000013_09007324_09008538
CI01000013_09734984_09737488.mRNA mRNA upstream 224936 9734887 ~ 9737488 (-) True CI01000013_09734984_09737488
CI01000013_09828630_09852321.mRNA mRNA upstream 317178 9827129 ~ 9852321 (-) True CI01000013_09828630_09852321
CI01000013_09930834_10008344.mRNA mRNA upstream 420586 9930537 ~ 10008506 (-) True CI01000013_09930834_10008344
CI01000013_10014588_10020597.mRNA mRNA upstream 504434 10014385 ~ 10020597 (-) True CI01000013_10014588_10020597
CI01000013_10037048_10083444.mRNA mRNA upstream 527097 10037048 ~ 10083444 (-) True CI01000013_10037048_10083444
TU95233 other downstream 186681 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU94655 other downstream 2127165 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 3625153 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 3765487 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 4758964 4748809 ~ 4750561 (-) True G81032
TU96930 other upstream 969910 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 1053508 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 1082253 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 1525081 11035032 ~ 11035466 (-) True G85401
TU97461 other upstream 2089109 11600778 ~ 11600941 (-) True G85628

Expression Profile