RNA id: TU95503


Basic Information

Item Value
RNA id TU95503
length 751
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id G83956
representative False

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9538472 ~ 9539609 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGTAGCCAGAAGCCCCCGTGCAGAGACGGGTGAATGTCTGAAGACATTCACACATCACTATATGTATATACATTTCTTTGGGTAATTGATGTTATGCATTCATTATTTCTGAATTGGCTTCTAATTGTCTAACTGTAATGTAATTGGCATGATACATTTTTACTTGACAAATAAAATATTATATTTGGTTTATTCTGTATTATTCTTAATTCATTATTTCTAGTAGATTAAAGCGAAGGTATTACCGCAAATCTGTGTTCAGGATAGATCATACGGAAGGTTTAATAGATGGAGCATAGGGCACATCAATTAAGTCCATTTCGATTTCTGACTATCGCTGCCTTAAATAAGTTGCAGTTTTCGTAAATATATAAAAACTATGCTTTTTGTTACGAGTAAGCAGAGCGCGACCGACTTAAAGGTAGATATTTACCCTGCATCCAATGTTTAAGGTCAGAACTGACGAGTTTGTGTCCGGGAAGAGCACTCAAGTCGGCCGAAGTGACTTTTCTGAAGCGATACCGGGACTGCAGTGAACGAATAATTGAAAATATAAGATAATCAGAATAATCAAAAATCTAAATTAATGCATAACCAATGGTTCATTTCTAATTGGAAACTCAACCTAAGAATGAGTAACATTTGAAATTGGAGTCAGATTAAACGAGTGAAATTAAGTGAACTTCACAGAAGCGCTGAAAAGACATACACGCGTTAACCTTCGCCCAGGCCGTCGGATTCCGTTTTTGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95496 lncRNA downstream 17537 9520722 ~ 9520935 (-) True G83949
TU95489 lncRNA downstream 28521 9509525 ~ 9509951 (-) True G83942
TU95468 lncRNA downstream 49666 9488567 ~ 9488806 (-) True G83921
TU95431 lncRNA downstream 78319 9452451 ~ 9460153 (-) True G83891
TU95425 lncRNA downstream 98556 9439441 ~ 9439916 (-) True G83888
TU95523 lncRNA upstream 7051 9546660 ~ 9547069 (-) True G83975
TU95532 lncRNA upstream 14205 9553814 ~ 9554037 (-) True G83982
TU95536 lncRNA upstream 18158 9557767 ~ 9557970 (-) True G83986
TU95537 lncRNA upstream 18739 9558348 ~ 9558710 (-) True G83987
TU95540 lncRNA upstream 23431 9563040 ~ 9563390 (-) True G83990
CI01000013_09444914_09445539.mRNA mRNA downstream 91919 9444425 ~ 9446553 (-) True CI01000013_09444914_09445539
CI01000013_09336832_09367107.mRNA mRNA downstream 171168 9336572 ~ 9367304 (-) True CI01000013_09336832_09367107
CI01000013_09309438_09335834.mRNA mRNA downstream 202395 9309372 ~ 9336077 (-) False CI01000013_09309438_09335834
CI01000013_09293519_09305846.mRNA mRNA downstream 232626 9293133 ~ 9305846 (-) True CI01000013_09293519_09305846
CI01000013_09007324_09008538.mRNA mRNA downstream 529723 9007257 ~ 9008749 (-) True CI01000013_09007324_09008538
CI01000013_09734984_09737488.mRNA mRNA upstream 195278 9734887 ~ 9737488 (-) True CI01000013_09734984_09737488
CI01000013_09828630_09852321.mRNA mRNA upstream 287520 9827129 ~ 9852321 (-) True CI01000013_09828630_09852321
CI01000013_09930834_10008344.mRNA mRNA upstream 390928 9930537 ~ 10008506 (-) True CI01000013_09930834_10008344
CI01000013_10014588_10020597.mRNA mRNA upstream 474776 10014385 ~ 10020597 (-) True CI01000013_10014588_10020597
CI01000013_10037048_10083444.mRNA mRNA upstream 497439 10037048 ~ 10083444 (-) True CI01000013_10037048_10083444
TU95233 other downstream 215628 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU94655 other downstream 2156112 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 3654100 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 3794434 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 4787911 4748809 ~ 4750561 (-) True G81032
TU96930 other upstream 940252 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 1023850 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 1052595 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 1495423 11035032 ~ 11035466 (-) True G85401
TU97461 other upstream 2059451 11600778 ~ 11600941 (-) True G85628

Expression Profile