RNA id: TU95540


Basic Information

Item Value
RNA id TU95540
length 351
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G83990
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9563040 ~ 9563390 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACAATTCTGTCTCTGAGCTCTTCAGGCAGTTCCTTTGACCTCATGATTCTCATTTGCTCTGACATGCACTGTGAGCTGTAAGGTCTTATATAGACAGGTGTGTGGCTTTCCTAATCAAGTCCAATCAGTATAATCAAACACAGCTGGACTCAAATGAAGGTGTAGAACCATCTCAAGGATGATAAGAAGAAATGGACAGCACCTGAGTTAAATATATGAGTGTCACAGAAAAGGGTCTGAATACTTAGGACCATGTGATATTTCAGTTTTTCTTTTTTAATAAATCTGCAAAAATGTCAACAATTCTGTGTTTTTCTGTCAATATGGGGTGCTGTGTGTACATTAATGAGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95537 lncRNA downstream 4330 9558348 ~ 9558710 (-) True G83987
TU95536 lncRNA downstream 5070 9557767 ~ 9557970 (-) True G83986
TU95532 lncRNA downstream 9003 9553814 ~ 9554037 (-) True G83982
TU95523 lncRNA downstream 15971 9546660 ~ 9547069 (-) True G83975
TU95503 lncRNA downstream 23431 9538472 ~ 9539609 (-) False G83956
TU95546 lncRNA upstream 10372 9573762 ~ 9574162 (-) True G83996
TU95548 lncRNA upstream 18613 9582003 ~ 9582233 (-) True G83998
TU95559 lncRNA upstream 38387 9601777 ~ 9602244 (-) True G84006
TU95618 lncRNA upstream 62138 9625528 ~ 9625762 (-) True G84048
TU95619 lncRNA upstream 62657 9626047 ~ 9626250 (-) True G84049
CI01000013_09444914_09445539.mRNA mRNA downstream 116487 9444425 ~ 9446553 (-) True CI01000013_09444914_09445539
CI01000013_09336832_09367107.mRNA mRNA downstream 195736 9336572 ~ 9367304 (-) True CI01000013_09336832_09367107
CI01000013_09309438_09335834.mRNA mRNA downstream 226963 9309372 ~ 9336077 (-) False CI01000013_09309438_09335834
CI01000013_09293519_09305846.mRNA mRNA downstream 257194 9293133 ~ 9305846 (-) True CI01000013_09293519_09305846
CI01000013_09007324_09008538.mRNA mRNA downstream 554291 9007257 ~ 9008749 (-) True CI01000013_09007324_09008538
CI01000013_09734984_09737488.mRNA mRNA upstream 171497 9734887 ~ 9737488 (-) True CI01000013_09734984_09737488
CI01000013_09828630_09852321.mRNA mRNA upstream 263739 9827129 ~ 9852321 (-) True CI01000013_09828630_09852321
CI01000013_09930834_10008344.mRNA mRNA upstream 367147 9930537 ~ 10008506 (-) True CI01000013_09930834_10008344
CI01000013_10014588_10020597.mRNA mRNA upstream 450995 10014385 ~ 10020597 (-) True CI01000013_10014588_10020597
CI01000013_10037048_10083444.mRNA mRNA upstream 473658 10037048 ~ 10083444 (-) True CI01000013_10037048_10083444
TU95233 other downstream 240196 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU94655 other downstream 2180680 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 3678668 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 3819002 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 4812479 4748809 ~ 4750561 (-) True G81032
TU96930 other upstream 916471 10479861 ~ 10480700 (-) True G85170
TU96941 other upstream 1000069 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 1028814 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 1471642 11035032 ~ 11035466 (-) True G85401
TU97461 other upstream 2035670 11600778 ~ 11600941 (-) True G85628

Expression Profile