RNA id: TU95754


Basic Information

Item Value
RNA id TU95754
length 238
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G84180
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 9918097 ~ 9918334 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCTCAGAGTTCTGCATTCTGGCATGTTCCTTCTGCATGGCCCCTGTGCAGTGTTGCAAGAGTAAAACTCATAATATATCTCACAATCCTTCGTGCCACAGACCTGAATGATACATCAAATCTTGTGGCTTGTTGAGGAGAAGTGTGCTATTACTTTTAAAAGAAATTGGGCATGTGATTATCTCATAGATATACATTGGAGAAGGGACCTGGACCATATCTAGGGACCAGAATATCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU95753 lncRNA upstream 434 9916805 ~ 9917663 (+) True G84179
TU95743 lncRNA upstream 14175 9901108 ~ 9903922 (+) False G84171
TU95745 lncRNA upstream 16193 9901108 ~ 9901904 (+) True G84171
TU95738 lncRNA upstream 28414 9885667 ~ 9889683 (+) True G84167
TU95734 lncRNA upstream 53509 9864388 ~ 9864588 (+) True G84163
TU95755 lncRNA downstream 1690 9920024 ~ 9920246 (+) True G84181
TU95771 lncRNA downstream 116867 10035201 ~ 10036953 (+) True G84194
TU95796 lncRNA downstream 161099 10079433 ~ 10081200 (+) True G84216
TU95797 lncRNA downstream 163960 10082294 ~ 10084049 (+) True G84217
TU95823 lncRNA downstream 199280 10117614 ~ 10117854 (+) True G84242
CI01000013_09681047_09683275.mRNA mRNA upstream 234664 9681047 ~ 9683433 (+) True CI01000013_09681047_09683275
CI01000013_09430170_09443518.mRNA mRNA upstream 474074 9430170 ~ 9444023 (+) True CI01000013_09430170_09443518
CI01000013_09279917_09290301.mRNA mRNA upstream 627337 9279917 ~ 9290760 (+) True CI01000013_09279917_09290301
CI01000013_09243644_09260619.mRNA mRNA upstream 657478 9243644 ~ 9260619 (+) True CI01000013_09243644_09260619
CI01000013_09178561_09180465.mRNA mRNA upstream 736940 9177107 ~ 9181157 (+) False CI01000013_09178561_09180465
CI01000013_10261599_10283287.mRNA mRNA downstream 341937 10260271 ~ 10283967 (+) True CI01000013_10261599_10283287
CI01000013_10335904_10336688.mRNA mRNA downstream 417570 10335904 ~ 10336896 (+) True CI01000013_10335904_10336688
CI01000013_10502138_10525511.mRNA mRNA downstream 582356 10500690 ~ 10525674 (+) True CI01000013_10502138_10525511
CI01000013_10586449_10594082.mRNA mRNA downstream 667484 10585818 ~ 10594442 (+) True CI01000013_10586449_10594082
CI01000013_10756927_10790192.mRNA mRNA downstream 838593 10756927 ~ 10790489 (+) False CI01000013_10756927_10790192
TU95556 other upstream 315862 9601611 ~ 9602235 (+) False G84005
TU95558 other upstream 315913 9601611 ~ 9602184 (+) False G84005
TU93966 other upstream 583149 9329329 ~ 9334948 (+) True G82581
TU93521 other upstream 1876754 8028338 ~ 8041343 (+) True G82168
TU93312 other upstream 2579858 7335945 ~ 7338239 (+) True G81994
TU95773 other downstream 112274 10030608 ~ 10036793 (+) False G84194
TU95794 other downstream 158120 10076454 ~ 10079336 (+) True G84215
TU95833 other downstream 296793 10215127 ~ 10215962 (+) True G84250
TU96004 other downstream 853952 10772286 ~ 10784757 (+) False CI01000013_10756927_10790192
TU96453 other downstream 2251655 12169989 ~ 12170818 (+) True G84768

Expression Profile