RNA id: TU96930


Basic Information

Item Value
RNA id TU96930
length 840
RNA type TUCP
GC content 0.51
exon number 1
gene id G85170
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 10479861 ~ 10480700 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTGGACTACAAATCCCAAGCGCCCACATACCTGGCCTGATTACGGCGCACCTGTTTCACGTCAGCCAGCTATTTAAGCCACACACACACACTCCTTGCAAAGTATTGTTTGCCCAGCAACAATTTCTGAGCGTTTTTCCCTGTTTTCTATCTGCCTGTGTATTGACCTTGTTTGGATTACTGCCCTTGGATTGTTTGCCACCTGCCTGTTACCCTTTGTTTGCCTGGACTGCGTCTTTGATTGTTTGCTGCTTGCCCCGATCTCTTGCCCGGTTATGACCACAATCATAGGACTGTCTCTGACACTGTTGTTTACCCTGCAAGGGTCACAGCCGCTGATTTCGCCCTAACTTTTCGCACGCTCACTGCGCAGACCGTATGGGTGGAAGCTACACTAAAGCTGCTGTTTCGACAAGGATTGAATATGGATTTGCAGTCCGAACCTGCTTGTCGCGACTAGGGGATGACGATGGACCAGTTCATTGAGTTAGCCATCCGTTTGGACAATCTGATACGTTCACGTAGATCTACCTGCGTCACCAATCCTCTCAGCCAAACTAATCTAGCCCCCGAAGTCGCAGAACCCATGCAAATCGGACGCACACACCTCTCTGCTGAAGAGCGTGAACGCCGCATCAGGAACCGCCTTTGCTTATACTGCGGACAAGCGGGCCATTTGAGAGCTGAATGCCCGACGCGTCCTCCCCATGTGCCGGATCGCAGGGTGAGTTTACTGATTTCCTCCATTCAAACTACCCATTGTATTGACGTACCTGTCCAACTCACATTCCAAGATAACACACTGTCTACTAAAGCATTGTTGGACTCAGGGGCAGCAGGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU96927 lncRNA downstream 5154 10474494 ~ 10474707 (-) True G85167
TU96829 lncRNA downstream 7353 10471917 ~ 10472508 (-) True G85069
TU96915 lncRNA downstream 32562 10446917 ~ 10447299 (-) True G85155
TU96880 lncRNA downstream 78753 10400546 ~ 10401108 (-) True G85120
TU96877 lncRNA downstream 84810 10394785 ~ 10395051 (-) True G85117
TU96931 lncRNA upstream 5427 10486127 ~ 10486350 (-) True G85171
TU96932 lncRNA upstream 6659 10487359 ~ 10487623 (-) True G85172
TU96933 lncRNA upstream 8134 10488834 ~ 10489357 (-) True G85173
TU96934 lncRNA upstream 9114 10489814 ~ 10490209 (-) True G85174
TU96953 lncRNA upstream 46686 10527386 ~ 10534187 (-) False G85186
CI01000013_10338616_10372320.mRNA mRNA downstream 104705 10338538 ~ 10375156 (-) True CI01000013_10338616_10372320
CI01000013_10218387_10244139.mRNA mRNA downstream 235722 10218370 ~ 10244139 (-) True CI01000013_10218387_10244139
CI01000013_10127318_10157548.mRNA mRNA downstream 322313 10127196 ~ 10157548 (-) True CI01000013_10127318_10157548
CI01000013_10037048_10083444.mRNA mRNA downstream 396417 10037048 ~ 10083444 (-) True CI01000013_10037048_10083444
CI01000013_10014588_10020597.mRNA mRNA downstream 459264 10014385 ~ 10020597 (-) True CI01000013_10014588_10020597
CI01000013_10540473_10556642.mRNA mRNA upstream 59715 10540415 ~ 10556688 (-) True CI01000013_10540473_10556642
CI01000013_10560692_10562065.mRNA mRNA upstream 79597 10560297 ~ 10562280 (-) True CI01000013_10560692_10562065
CI01000013_10564288_10569141.mRNA mRNA upstream 83018 10563718 ~ 10569290 (-) False CI01000013_10564288_10569141
CI01000013_10597504_10610862.mRNA mRNA upstream 116804 10597504 ~ 10610862 (-) True CI01000013_10597504_10610862
CI01000013_10799938_10806858.mRNA mRNA upstream 317898 10798598 ~ 10806858 (-) True CI01000013_10799938_10806858
TU95233 other downstream 1157017 9307036 ~ 9322844 (-) True CI01000013_09309438_09335834
TU94655 other downstream 3097501 7380297 ~ 7382360 (-) True G83206
TU94120 other downstream 4595489 5884149 ~ 5884372 (-) True G82727
TU92796 other downstream 4735823 5739526 ~ 5744038 (-) True G81547
TU92232 other downstream 5729300 4748809 ~ 4750561 (-) True G81032
TU96941 other upstream 82759 10572377 ~ 10572440 (-) True G85180
TU96958 other upstream 111504 10592204 ~ 10595337 (-) True G85188
TU97193 other upstream 554332 11035032 ~ 11035466 (-) True G85401
TU97461 other upstream 1118360 11600778 ~ 11600941 (-) True G85628

Expression Profile