RNA id: CI01000014_00960029_00966472.mRNA


Basic Information

Item Value
RNA id CI01000014_00960029_00966472.mRNA
length 1493
RNA type mRNA
GC content 0.50
exon number 7
gene id CI01000014_00960029_00966472
representative True

Chromosome Information

Item Value
chromosome id CI01000014
NCBI id null
chromosome length 1317303
location 959499 ~ 966472 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAACACTGGAGGACTTTGGGACTCGGTGAAGAAAGCAGCTTTTGTCATCGGATCTGGGCTTTTCTTCCTGGTCGGGTTCAGAAACTCTGTGACATGGCATCTGCAGAGGTTCTGGGGAGCGTCTGGAGATTTCTGGCAGACACAGTGGACCAAACTTCACCTCGCCTTGGGTGGAAATGAGGCTGCCTTGTTTTTTATCGGGACCATGTTGGTGCCGACGCTCTCGTTTTGGTTGTTTAACGCCCTGCTGATGGTGGTCGACACGACAGGAAAGCCCAGCTTCATCACACGCTACAGGATTCAGCCTGACAAAAACAATCCGGTGGATGTGGGCCGGTTGCGTCATGCGGTGAAGACGGTGCTGTTTAACCAGGTGTGTCTGTCGGGGCCGGTGGTGGTTCTGACCTACATGCTGATGAAGTGGCGCGGGGATCCGTGCGGCCCGGAGCTGCCCACCTTCCACTGGGTGCTGCTGGAGCTGGCCGTCTGCGGCCTGATGGAGGAGATCCTCTTCTACTACACACACAGGCTCGTCCACCATCCGTCGCTCTATAAGAGCATCCACAAGATTCATCACGAGTGGACGGCTCCGGTGGGAGTGGTGGCGCTCTACGCTCATCCGGTGGAGCATGTGCTGTCCAACATGCTGCCGGCTCTGGCGGGTCCGATCCTGCTCGGGTCACATGTCGCCACCACCAGCCTCTGGTTCACTATTGCTCTGCTGGTGACGACCGTCTCTCACTGCGGTTACCACTTACCCCTGCTGCCCTCGCCCGAGTTTCACGACTTCCACCATCTCAAGTTCAATCAGTGCTATGGAGTGCTGGGTGTGCTGGACAGGCTTCACGGGACCGACGAGAAGTTCCGTAACTCAAAGGCGTATGAGCGGCACACCGTCCTGCTGAGTCTGACCCCGCTGAGCGAGAGCATCCCTGAAGATGCCAAGAGAGCACAAGATTAACCTCACTGAGAGAGAACAGAATCCACATGTTCCTGTTTACTCTGCAAAGCTACTTTAATTGCGCAAGAGTTTGTAATCGATCTGGAGTATGGACACACACTCCTGCGTTCAGGATCACAGTGTTAAGGTTCAGGTTATTCAACCTAAAGCATTTCACTAATATATCAGGACTAAGCTAATTTACTGTTTCACACTTCACCTTATCTGAAGCTGCTCTGGTCGATGTTTGAGATCAGGGTTCAAATGCTGTTTGATGCACTCTAATGACCTGGTGTCATGTACAGAGATGATCCATTCCTGTATACAGTCCTTTTTATTGTTCTTAATCTTCTGTGTCTGTGTTCTCATATTGTCAAAATAGCACCAACATTTATACAGTTGATGAAAATGATTTTAATAATTCTGATCAATGATGTATTTTAATACTGAAAATCTAGTGATGGTTCTTGGGAATGAACTGTTGTACACGTGTTCATCTACTCTTCATGATGTGAGTTTCTGGATTTTCTGATGGAAGCTCAATCATTAAA

Function

GO:

id name namespace
GO:0006633 fatty acid biosynthetic process biological_process

KEGG:

id description
K07750 MESO1, ERG25; methylsterol monooxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU98519 lncRNA downstream 29566 929709 ~ 929933 (-) True G86515
TU98518 lncRNA downstream 30812 928378 ~ 928687 (-) True G86514
TU98504 lncRNA downstream 60815 898609 ~ 898684 (-) True G86501
TU98505 lncRNA downstream 63984 893769 ~ 895515 (-) True CI01000014_00891730_00895427
TU98496 lncRNA downstream 81013 877454 ~ 878486 (-) True G86498
TU98534 lncRNA upstream 16128 982600 ~ 982890 (-) True G86528
TU98537 lncRNA upstream 20688 987160 ~ 987439 (-) True G86531
TU98541 lncRNA upstream 25239 991711 ~ 991935 (-) True G86535
TU98545 lncRNA upstream 31731 998203 ~ 998422 (-) True G86539
TU98546 lncRNA upstream 31972 998444 ~ 998708 (-) True G86540
CI01000014_00954505_00954792.mRNA mRNA downstream 4487 954441 ~ 955012 (-) True CI01000014_00954505_00954792
CI01000014_00891730_00895427.mRNA mRNA downstream 63918 891677 ~ 895581 (-) False CI01000014_00891730_00895427
CI01000014_00880909_00886292.mRNA mRNA downstream 73207 880741 ~ 886292 (-) True CI01000014_00880909_00886292
CI01000014_00852874_00874645.mRNA mRNA downstream 84763 852515 ~ 874736 (-) True CI01000014_00852874_00874645
CI01000014_00821373_00846608.mRNA mRNA downstream 111439 821174 ~ 848060 (-) True CI01000014_00821373_00846608
CI01000014_01018144_01018740.mRNA mRNA upstream 51548 1018020 ~ 1018869 (-) False CI01000014_01018144_01018740
CI01000014_01125316_01139727.mRNA mRNA upstream 158701 1125173 ~ 1140358 (-) True CI01000014_01125316_01139727
CI01000014_01140519_01142565.mRNA mRNA upstream 173994 1140466 ~ 1142565 (-) True CI01000014_01140519_01142565
CI01000014_01147718_01148317.mRNA mRNA upstream 180109 1146581 ~ 1148317 (-) True CI01000014_01147718_01148317
CI01000014_01151900_01162885.mRNA mRNA upstream 185271 1151743 ~ 1162885 (-) True CI01000014_01151900_01162885
TU98536 other upstream 18746 985218 ~ 985744 (-) True G86530
TU98538 other upstream 21072 987544 ~ 988027 (-) True G86532

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00038050 True 2156 mRNA 0.49 8 NC_007132.7 45841731 ~ 45852112 (+)
bowfin (Amia calva) AMCG00011502 True 1567 mRNA 0.51 9 CM030133.1 27484188 ~ 27496643 (+)