RNA id: CI01000015_04572432_04575642.mRNA



Basic Information


Item Value
RNA id CI01000015_04572432_04575642.mRNA
length 1932
RNA type mRNA
GC content 0.40
exon number 4
gene id CI01000015_04572432_04575642
representative True

Chromosome Information


Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 4572432 ~ 4576978 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGTTTCTCAGTGGTGCCATGATGGATCGTCAAAGGAGTACAATCCAACAATCAGGTTGGCCTTGATTAATGTTTGTTCTTTGAAAAATAAGACCTTTATTCTGAACGAGTTTATCAGAGCTCGGAACTTAGACTTTCTATTTATCACCGAGACCTGGCTGAACGCTGGCAATATGGATGCTCTTGGGGAACTTGTTTTATGGTTTTTAATTCGCTGCGAGATACTGGAAGGGGAGAGGGCTGTAAGAACGGCGAGATCAAGGCACTTTGCAGATCTCATTGAGAAAAATCGTCATAAGCCTAATGTTCTATTCTCAATGATAGATTCGATTATTAATCCTAAATTAGAGGTGAGGCAGCATGTGAAGCAGCGTGTGCTGGGTGCAGGAGGGATTGGCGAACTGCTTGGACGAGGTCAGCGGAAATGGCAGGTAAAGCGGGAGATACGGAGGGCTGGAGAGACAGACGAACAGCAGTTACAAGATCGGCGAATGGATCAGTCGATCGACCCTCTCCAGAATCCGTGGAGCTCTGCATTTGGTCTGATCTTCTGTCACGTCACAGAAGGAAACAGACAGGATCGGCAGGAGGACTGAAGACAGACGGATGGCAGATGGCGGATGGCAGAAGACAGAAGACAGAAGACAGAAGAATCAGGTAAGTAGTCTTGAGGTTCATATGGACGAGACCAGACAAGGGAGTGCAGGAGAAGTGAGTCTTTATAGGGAGTGCTGATGATGAGGTGCAGGTGCAGGTGATTAGAACTCCGGGGATTGTGAACGAGTGGTTGGAGCGTGCTGATCTGGTGACGATGGGCTGTTGTTGGTTGGTGCTGGTTGTGACTCCGTGACACTAGAAAGCAATTTATTAGACATAAAATGTATAAGCTCCTACAAACAAGATGGATCATGAGTAAGTTTGTCTTTTTTTCTCAGAAGAAAAATTCAAAATTGTGTATATCTGATAGAAGAATAATTTTGTCCACTTTTAGAAGTATGCTAGCATATGTTAATGCTAACTGACAGGAACTAAAATCCATTAAAAATGTATTTTTAATATCAATATTTAACTTCAAGGATCAGATTGGTTTCTAAAACATATGTTGCGCCTAACAACACTTGTTTACAGTGGTAAAATCCATGTAACATATGGGCGTATTGCTTTTTTTTTTATTATTAATGTAAGTATTACTCTCAGATGCAATACTCTTAAATTTTACTTCAAGACAACATGAAATGAATGTAACCTGTTTTATACTTCCGTAATGTGATGTATTTCCAGGTAAATTAGGATATTCAATGAGAAAATTAGACCAGAAATAGGTATTAAGAAAATGAATGGTCCATTTTGATTTTATGTTTATGTTTTTGTACATTTATAGTATGTGAGGAGATCGTCTAGGCTATAATGGTGGATGACTTTACCTCTCAAAGTACAAATGATGTCCCTTTTCATCCGTATCTTATCCGCCATTGTGTTCAAGCCAGCCAGTAGTTTGCAGAAACTCCACCACCTAAATAGCACAATCACTCTCAAAATCTGCACGAGCTGAGTGAAATAACCACCGAATCAGGTTACATTAGAGGTGGATTATATGCTACAAAAGGCCTCTCAGTCTATAGTGTAGGACTTTTTTCTCTGGCAGTAGTAATGGAGTGAGGCTGGTTCATCAGTTATGCTGTCTGGGCTGTCATGGCAAATTTGAGTCCTTTGAGGATCAAAACGCAGTCCAACTACACAGCTTTAGGCTTGGCCTTTAGGTCGCTGGCTAGCATGTTCAACTCCAATTCCAAAGGTCATTAATTTAAATTTTACTTGAGTCAACATGCAGCCTGTCACAGGAAGCTTTTTTTCTTGAAAACATGGAAACATTGGAAACATCCTAAACCTTTTAAGATATGGAGAATATATTTATTCATTCAGTAAAACTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU102283 lncRNA upstream 11269 4560410 ~ 4561163 (+) True G89889
TU102227 lncRNA upstream 71497 4482975 ~ 4500935 (+) True G89833
TU102218 lncRNA upstream 240245 4317730 ~ 4332187 (+) True G89824
TU102230 lncRNA upstream 339653 4232499 ~ 4232779 (+) True G89836
TU102229 lncRNA upstream 340208 4232024 ~ 4232224 (+) True G89835
TU102386 lncRNA downstream 151945 4728923 ~ 4763612 (+) True G89987
TU102352 lncRNA downstream 162961 4740830 ~ 4743778 (+) True G89954
TU102394 lncRNA downstream 169944 4746922 ~ 4747230 (+) True G89995
TU102404 lncRNA downstream 187210 4764188 ~ 4764396 (+) True G90003
TU102406 lncRNA downstream 188105 4765083 ~ 4765302 (+) True G90005
CI01000015_04352229_04502732.mRNA mRNA upstream 69700 4352229 ~ 4502732 (+) True CI01000015_04352229_04502732
CI01000015_04101282_04101626.mRNA mRNA upstream 470757 4100685 ~ 4101675 (+) True CI01000015_04101282_04101626
CI01000015_03872971_03904497.mRNA mRNA upstream 667771 3872971 ~ 3904661 (+) True CI01000015_03872971_03904497
CI01000015_03858281_03868648.mRNA mRNA upstream 703784 3858281 ~ 3868648 (+) True CI01000015_03858281_03868648
CI01000015_03852286_03855347.mRNA mRNA upstream 716891 3852238 ~ 3855541 (+) True CI01000015_03852286_03855347
CI01000015_04738933_04739438.mRNA mRNA downstream 161209 4738187 ~ 4740035 (+) False CI01000015_04738933_04739438
CI01000015_05107856_05112960.mRNA mRNA downstream 529851 5106829 ~ 5113092 (+) True CI01000015_05107856_05112960
CI01000015_05118838_05146194.mRNA mRNA downstream 541676 5118654 ~ 5146513 (+) True CI01000015_05118838_05146194
CI01000015_05180590_05193148.mRNA mRNA downstream 603319 5180297 ~ 5194372 (+) True CI01000015_05180590_05193148
CI01000015_05403728_05409946.mRNA mRNA downstream 826180 5403158 ~ 5409946 (+) True CI01000015_05403728_05409946
TU102216 other upstream 258081 4291846 ~ 4314351 (+) True G89822
TU100954 other upstream 1542142 3026680 ~ 3030290 (+) False G88670
TU100955 other upstream 1542142 3026680 ~ 3030290 (+) True G88670
TU100556 other upstream 2056003 2512970 ~ 2513011 (+) True G88328
TU100381 other upstream 2071838 2384016 ~ 2500594 (+) False G88172
TU103067 other downstream 637318 5214296 ~ 5216731 (+) False G90622
TU103058 other downstream 639426 5216404 ~ 5263807 (+) False G90622
TU103147 other downstream 831388 5408366 ~ 5408440 (+) True G90687
TU103259 other downstream 1327116 5904094 ~ 5906150 (+) False G90777
TU103261 other downstream 1327819 5904797 ~ 5907461 (+) False G90777

Expression Profile