Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00000117 |
| length | 863 |
| RNA type | processed_transcript |
| GC content | 0.55 |
| exon number | 5 |
| gene id | XLOC_000060 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 5402476 ~ 5419116 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0007017 | microtubule-based process | biological_process |
| GO:0000226 | microtubule cytoskeleton organization | biological_process |
| GO:0000278 | mitotic cell cycle | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005874 | microtubule | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0003924 | GTPase activity | molecular_function |
| GO:0005525 | GTP binding | molecular_function |
| GO:0005200 | structural constituent of cytoskeleton | molecular_function |
| GO:0000166 | nucleotide binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-040426-1646 | Predicted to enable GTP binding activity. Predicted to be a structural constituent of cytoskeleton. Predicted to be involved in microtubule cytoskeleton organization and mitotic cell cycle. Predicted to act upstream of or within microtubule-based process. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and microtubule. Is expressed in gill. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 22. Orthologous to human TUBA4A (tubulin alpha 4a). |
| ensembl_id | ENSDART00000122569 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003018 | lncRNA | upstream | 88939 | 5311479 ~ 5313595 (+) | False | XLOC_000059 |
| TCONS_00003017 | lncRNA | upstream | 88939 | 5311479 ~ 5313595 (+) | True | XLOC_000059 |
| TCONS_00002809 | lncRNA | upstream | 372379 | 4901460 ~ 5030155 (+) | True | XLOC_000057 |
| TCONS_00000113 | lncRNA | upstream | 722057 | 4598060 ~ 4680477 (+) | True | XLOC_000056 |
| TCONS_00003016 | lncRNA | upstream | 1681931 | 3718666 ~ 3720603 (+) | True | XLOC_000053 |
| TCONS_00003019 | lncRNA | downstream | 288463 | 5706970 ~ 5728684 (+) | True | XLOC_000064 |
| TCONS_00003020 | lncRNA | downstream | 376506 | 5795013 ~ 5799092 (+) | False | XLOC_000065 |
| TCONS_00003021 | lncRNA | downstream | 376528 | 5795035 ~ 5799092 (+) | True | XLOC_000065 |
| TCONS_00000128 | lncRNA | downstream | 743506 | 6162013 ~ 6166554 (+) | False | XLOC_000067 |
| TCONS_00000131 | lncRNA | downstream | 753336 | 6171843 ~ 6177337 (+) | False | XLOC_000067 |
| TCONS_00000114 | mRNA | upstream | 124951 | 5273481 ~ 5277583 (+) | False | XLOC_000058 |
| TCONS_00000115 | mRNA | upstream | 124957 | 5275811 ~ 5277577 (+) | True | XLOC_000058 |
| TCONS_00000112 | mRNA | upstream | 1248202 | 4101741 ~ 4154332 (+) | True | XLOC_000055 |
| TCONS_00000110 | mRNA | upstream | 2366515 | 2712956 ~ 3036019 (+) | True | XLOC_000052 |
| TCONS_00000106 | mRNA | upstream | 2958324 | 2301974 ~ 2444210 (+) | False | XLOC_000050 |
| TCONS_00000118 | mRNA | downstream | 3932 | 5422439 ~ 5434261 (+) | False | XLOC_000061 |
| TCONS_00000119 | mRNA | downstream | 4069 | 5422576 ~ 5426706 (+) | True | XLOC_000061 |
| TCONS_00000122 | mRNA | downstream | 67292 | 5485799 ~ 5504130 (+) | False | XLOC_000062 |
| TCONS_00000124 | mRNA | downstream | 157644 | 5576151 ~ 5587575 (+) | True | XLOC_000063 |
| TCONS_00000125 | mRNA | downstream | 716669 | 6135176 ~ 6158609 (+) | False | XLOC_000066 |
| TCONS_00000111 | other | upstream | 1642500 | 3759924 ~ 3760034 (+) | True | XLOC_000054 |
| TCONS_00000104 | other | upstream | 2960851 | 2301972 ~ 2441683 (+) | False | XLOC_000050 |
| TCONS_00000108 | other | upstream | 2999310 | 2403103 ~ 2403224 (+) | True | XLOC_000051 |
| TCONS_00000102 | other | upstream | 3099911 | 2301958 ~ 2302623 (+) | False | XLOC_000050 |
| TCONS_00000100 | other | upstream | 3102988 | 2286849 ~ 2299546 (+) | False | XLOC_000048 |
| TCONS_00000120 | other | downstream | 18883 | 5437390 ~ 5487162 (+) | False | XLOC_000062 |
| TCONS_00000121 | other | downstream | 20236 | 5438743 ~ 5450444 (+) | False | XLOC_000062 |
| TCONS_00000123 | other | downstream | 78778 | 5497285 ~ 5502084 (+) | True | XLOC_000062 |
| TCONS_00000134 | other | downstream | 763835 | 6182342 ~ 6185532 (+) | False | XLOC_000067 |
| TCONS_00000149 | other | downstream | 1369183 | 6787690 ~ 6787804 (+) | True | XLOC_000078 |
