RNA id: TCONS_00003179


Basic Information

Item Value
RNA id TCONS_00003179
length 649
lncRNA type inter_gene
GC content 0.46
exon number 2
gene id XLOC_000715
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 54611838 ~ 54613479 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCAATATTGTGAACGAAGTCTGTCTGATGGAGACTGCTGAACAAAGCTGCACTGATCTTTTCCTGGTGAAGATGGAGCAGATTGAAAACAATTAGGCAACACAGACACCAGATGTGGAGACGAAAACCTGCCAGCCGTCAGCTGGACAAGAACAGACGAGGAAAAGACCCTGTCTGACTAAACATTCTGTCACTTCTCATCAAAGCTACACAGGCGATACTGAACAGACTTTCACGTTCATATTCAAGCAAAGCCTCGAGAGACACTCACAAGGTCACACTGTAGAGAAGTATTTTACATGTTCTGAATGTGGGAAGAGCTTCGCCGAGAGACACAATCTTAAAATTCACTTGAgcattcacaccggagagaagcctttcGCATGCccccagtgtggaaagagctttagggttaccaactattccagcatatgttttacgcagcagatgcccttccagcggcaatccagtactgggaaacacccatacactatgcattcaaacacactctcattcattacggccaatttagtttacctaatTCTCCTATAGAGTATGTTTTTTGggctatgggggaaaccggagcacccaggaaacccacaccaacacgaggagaacatgcaaactccacacagaaacaccaattggc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003177 lncRNA upstream 142549 54277243 ~ 54469289 (+) True XLOC_000712
TCONS_00003178 lncRNA upstream 207691 54401933 ~ 54404147 (+) True XLOC_000713
TCONS_00003176 lncRNA upstream 623062 53982614 ~ 53988776 (+) True XLOC_000703
TCONS_00001173 lncRNA upstream 663330 53946000 ~ 53948508 (+) True XLOC_000701
TCONS_00003175 lncRNA upstream 746001 53864528 ~ 53865837 (+) True XLOC_000699
TCONS_00003180 lncRNA downstream 84694 54698173 ~ 54700755 (+) False XLOC_000721
TCONS_00003181 lncRNA downstream 84704 54698183 ~ 54700755 (+) False XLOC_000721
TCONS_00003182 lncRNA downstream 84709 54698188 ~ 54700755 (+) True XLOC_000721
TCONS_00001210 lncRNA downstream 292271 54905750 ~ 54906707 (+) True XLOC_000726
TCONS_00003183 lncRNA downstream 346013 54959492 ~ 54985297 (+) False XLOC_000729
TCONS_00001190 mRNA upstream 3806 54606354 ~ 54608032 (+) True XLOC_000714
TCONS_00001188 mRNA upstream 336977 54198893 ~ 54274861 (+) False XLOC_000711
TCONS_00001189 mRNA upstream 338016 54199406 ~ 54273822 (+) True XLOC_000711
TCONS_00001187 mRNA upstream 412748 54194801 ~ 54199090 (+) False XLOC_000711
TCONS_00001185 mRNA upstream 465377 54137089 ~ 54146461 (+) True XLOC_000709
TCONS_00001191 mRNA downstream 13012 54626491 ~ 54637378 (+) True XLOC_000716
TCONS_00001192 mRNA downstream 24647 54638126 ~ 54647650 (+) False XLOC_000717
TCONS_00001193 mRNA downstream 25314 54638793 ~ 54648766 (+) True XLOC_000717
TCONS_00001194 mRNA downstream 36569 54650048 ~ 54659923 (+) False XLOC_000718
TCONS_00001195 mRNA downstream 41681 54655160 ~ 54659806 (+) True XLOC_000718
TCONS_00001186 other upstream 425682 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 550628 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 1223957 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 1243804 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001154 other upstream 1550641 52999832 ~ 53061197 (+) False XLOC_000682
TCONS_00001221 other downstream 514986 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001233 other downstream 680146 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 2734419 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 3546672 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 4517813 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

//