Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00001191 |
| length | 689 |
| RNA type | mRNA |
| GC content | 0.47 |
| exon number | 5 |
| gene id | XLOC_000716 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007112.7 |
| NCBI id | CM002885.2 |
| chromosome length | 59578282 |
| location | 54626491 ~ 54637378 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-030131-1143 | Predicted to enable metal ion binding activity. Predicted to be located in endosome membrane and lysosomal membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in Charcot-Marie-Tooth disease type 1C. Orthologous to human LITAF (lipopolysaccharide induced TNF factor). |
| ensembl_id | ENSDART00000136063 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00003179 | lncRNA | upstream | 13012 | 54611838 ~ 54613479 (+) | True | XLOC_000715 |
| TCONS_00003177 | lncRNA | upstream | 157202 | 54277243 ~ 54469289 (+) | True | XLOC_000712 |
| TCONS_00003178 | lncRNA | upstream | 222344 | 54401933 ~ 54404147 (+) | True | XLOC_000713 |
| TCONS_00003176 | lncRNA | upstream | 637715 | 53982614 ~ 53988776 (+) | True | XLOC_000703 |
| TCONS_00001173 | lncRNA | upstream | 677983 | 53946000 ~ 53948508 (+) | True | XLOC_000701 |
| TCONS_00003180 | lncRNA | downstream | 60795 | 54698173 ~ 54700755 (+) | False | XLOC_000721 |
| TCONS_00003181 | lncRNA | downstream | 60805 | 54698183 ~ 54700755 (+) | False | XLOC_000721 |
| TCONS_00003182 | lncRNA | downstream | 60810 | 54698188 ~ 54700755 (+) | True | XLOC_000721 |
| TCONS_00001210 | lncRNA | downstream | 268372 | 54905750 ~ 54906707 (+) | True | XLOC_000726 |
| TCONS_00003183 | lncRNA | downstream | 322114 | 54959492 ~ 54985297 (+) | False | XLOC_000729 |
| TCONS_00001190 | mRNA | upstream | 18459 | 54606354 ~ 54608032 (+) | True | XLOC_000714 |
| TCONS_00001188 | mRNA | upstream | 351630 | 54198893 ~ 54274861 (+) | False | XLOC_000711 |
| TCONS_00001189 | mRNA | upstream | 352669 | 54199406 ~ 54273822 (+) | True | XLOC_000711 |
| TCONS_00001187 | mRNA | upstream | 427401 | 54194801 ~ 54199090 (+) | False | XLOC_000711 |
| TCONS_00001185 | mRNA | upstream | 480030 | 54137089 ~ 54146461 (+) | True | XLOC_000709 |
| TCONS_00001192 | mRNA | downstream | 748 | 54638126 ~ 54647650 (+) | False | XLOC_000717 |
| TCONS_00001193 | mRNA | downstream | 1415 | 54638793 ~ 54648766 (+) | True | XLOC_000717 |
| TCONS_00001194 | mRNA | downstream | 12670 | 54650048 ~ 54659923 (+) | False | XLOC_000718 |
| TCONS_00001195 | mRNA | downstream | 17782 | 54655160 ~ 54659806 (+) | True | XLOC_000718 |
| TCONS_00001196 | mRNA | downstream | 36468 | 54673846 ~ 54680103 (+) | False | XLOC_000719 |
| TCONS_00001186 | other | upstream | 440335 | 54186039 ~ 54186156 (+) | True | XLOC_000710 |
| TCONS_00001180 | other | upstream | 565281 | 54053104 ~ 54061210 (+) | True | XLOC_000705 |
| TCONS_00001166 | other | upstream | 1238610 | 53387765 ~ 53387881 (+) | True | XLOC_000690 |
| TCONS_00001160 | other | upstream | 1258457 | 53364510 ~ 53368034 (+) | True | XLOC_000689 |
| TCONS_00001154 | other | upstream | 1565294 | 52999832 ~ 53061197 (+) | False | XLOC_000682 |
| TCONS_00001221 | other | downstream | 491087 | 55128465 ~ 55128579 (+) | True | XLOC_000733 |
| TCONS_00001233 | other | downstream | 656247 | 55293625 ~ 55297251 (+) | False | XLOC_000739 |
| TCONS_00001304 | other | downstream | 2710520 | 57347898 ~ 57355033 (+) | False | XLOC_000813 |
| TCONS_00001335 | other | downstream | 3522773 | 58160151 ~ 58173589 (+) | True | XLOC_000837 |
| TCONS_00001394 | other | downstream | 4493914 | 59131292 ~ 59131406 (+) | True | XLOC_000888 |
