RNA id: TU102065


Basic Information

Item Value
RNA id TU102065
length 237
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G89675
representative True

Chromosome Information

Item Value
chromosome id CI01000015
NCBI id null
chromosome length 8631711
location 4081369 ~ 4081605 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAAAATCACATTAATTTTTTACAGTGTAGCTGAATGCTCTTGTGTCTCACACTGAGCTTTTTAGATACAGATTTCAGCAGTAGGTACAAATTTCCTGGGAAAAGTCAATATTGTAGTACACAAAAAGAAAATGGACATTTGGTCACACTTTATATTAGGTGTCCTTATCGACTATGTACTTACATCAAAAAATAAGTACAGTGTTTTTGAAGTGGATACAGGTAAGGTTAGGGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102061 lncRNA upstream 5713 4075163 ~ 4075656 (+) True G89671
TU102037 lncRNA upstream 26690 4054473 ~ 4054679 (+) True G89650
TU102024 lncRNA upstream 32837 4048061 ~ 4048532 (+) True G89637
TU102025 lncRNA upstream 34945 4044142 ~ 4046424 (+) True G89638
TU102018 lncRNA upstream 45371 4035765 ~ 4035998 (+) True G89631
TU102104 lncRNA downstream 44644 4126249 ~ 4126639 (+) True G89714
TU102109 lncRNA downstream 49501 4131106 ~ 4131388 (+) True G89719
TU102116 lncRNA downstream 56401 4138006 ~ 4138261 (+) True G89726
TU102122 lncRNA downstream 62125 4143730 ~ 4144004 (+) True G89732
TU102123 lncRNA downstream 64525 4146130 ~ 4146350 (+) True G89733
CI01000015_03872971_03904497.mRNA mRNA upstream 176708 3872971 ~ 3904661 (+) True CI01000015_03872971_03904497
CI01000015_03858281_03868648.mRNA mRNA upstream 212721 3858281 ~ 3868648 (+) True CI01000015_03858281_03868648
CI01000015_03852286_03855347.mRNA mRNA upstream 225828 3852238 ~ 3855541 (+) True CI01000015_03852286_03855347
CI01000015_03826245_03844971.mRNA mRNA upstream 235979 3826245 ~ 3845390 (+) True CI01000015_03826245_03844971
CI01000015_03733443_03765495.mRNA mRNA upstream 315861 3733443 ~ 3765508 (+) True CI01000015_03733443_03765495
CI01000015_04101282_04101626.mRNA mRNA downstream 19080 4100685 ~ 4101675 (+) True CI01000015_04101282_04101626
CI01000015_04352229_04502732.mRNA mRNA downstream 270624 4352229 ~ 4502732 (+) True CI01000015_04352229_04502732
CI01000015_04572432_04575642.mRNA mRNA downstream 490827 4572432 ~ 4576978 (+) True CI01000015_04572432_04575642
CI01000015_04738933_04739438.mRNA mRNA downstream 656582 4738187 ~ 4740035 (+) False CI01000015_04738933_04739438
CI01000015_05107856_05112960.mRNA mRNA downstream 1025224 5106829 ~ 5113092 (+) True CI01000015_05107856_05112960
TU100954 other upstream 1051079 3026680 ~ 3030290 (+) False G88670
TU100955 other upstream 1051079 3026680 ~ 3030290 (+) True G88670
TU100556 other upstream 1564940 2512970 ~ 2513011 (+) True G88328
TU100381 other upstream 1580775 2384016 ~ 2500594 (+) False G88172
TU100157 other upstream 2204775 1876004 ~ 1876594 (+) True G87972
TU102216 other downstream 210241 4291846 ~ 4314351 (+) True G89822
TU103067 other downstream 1132691 5214296 ~ 5216731 (+) False G90622
TU103058 other downstream 1134799 5216404 ~ 5263807 (+) False G90622
TU103147 other downstream 1326761 5408366 ~ 5408440 (+) True G90687
TU103259 other downstream 1822489 5904094 ~ 5906150 (+) False G90777

Expression Profile