RNA id: CI01000016_00153934_00154312.mRNA



Basic Information


Item Value
RNA id CI01000016_00153934_00154312.mRNA
length 1594
RNA type mRNA
GC content 0.40
exon number 2
gene id CI01000016_00153934_00154312
representative True

Chromosome Information


Item Value
chromosome id CI01000016
NCBI id null
chromosome length 12175457
location 153908 ~ 155622 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGGGGAAGGATCAGATTTACATGGTAGTGCAAGTAACTGAAAAATCCAATATTACGGGTGATGGTGTACATTGAGATGTATTGCAACCTATTGATTTTACTCTGAGCTATTATATTGCATGTGTATCAAAGTCAATTGTTTACATATATGACATGTAGAGTCACTATATAATATCTCATATTACAAAAAGTGCTCTGGAAATACTATGGTATCAATGTTATCGTTAACTAAAATGAAACTAATGAAAAAATTTCAACTTTCAGAAATTGAAATGAAGCTGTATTAGATGAACATTTTCAACTTAAAAAAACAGTTAATTTAAAAAAAGTACTAAAATTACTGAAACTGAAAAAATTAAATTTAACGCTAAATATAAAAAAAAATTAATGGGTGATTTAAAGTCAGCATGAAATGGAAGTTCCAATTTCTTTTCTTCTCTATTGTGATGTATATGGCTTTTCAACAAAAAAATGAATGGCAGGACTTGATTTCGTCCATCGGGAATCGATTGGATCGTTGGATATTCATAGTTTGCGATTGCTGTGATTGACAGGTTGTCTCACCCTTGCGCCAGAGATGTTGATGTTGCTGCAAGAGAAAGAGGAAGTTACTTTGATTAAAGATTACGAGCGCACATGAATTAAAAAAATTAATAAATAAAAATTATGTGCAATATTCCATTAAAAAAAAAAAAAAAAACTTTTTTCAATTTTTACTTTAAACCTGGAAATAAACAGAAAGTTTTGGATTTTTACTTTATTATTCTAGATTATGAACCAAATAGAACATATACTTTACATTTCACTCCTGCATTATCTTTGACTCTCTTTGTGTTCCTGCAGCAGGCAGCATTGTTTCTCTCTGTCTCACTCTCTACATCTCTGTCTCTCGCTCTCTCCCTCTCTTTGGCAGGCTGCTGTATGCCATGCACAGGCGCAGCCCGACTCTGTGGGGAGGCTGATCTAGTTATATAACAGTCGGTGCAGCCGTTGTCTGCTGGAAGACGAGCATGCAGGCATCCCTGTTACATAAGCCTGTTAGGATCATATTGTCACACCGTGGAGCATTCACAACGCAGTGTCCTTGCTACTGTGCTTCCCTCTTTCTCTCTCGCTCTTGGGAAAGAAAACCCAACAAAAGGGTGGTCCAATGCAGTTCAGAGAGCGTGAACTTTGCAATCACAGTTAACCCAATCAAAACAGACCTCTCTGCATGGCCTAAACCCCCCACCCACTCGACCGTCACGCACCTCACAGCCACAAGCCCAGTCAGGTGTCCTGTTTGACTCAGCCGAGGACGGCGGCTGTCATGACGATGCAGCCAGCAGCCGTCTCGTTCTCCACAGGGAGTCTGAACGGCAGTGGCATCCAGAGATGGGATCAGGCAGCTGTGAGCTATGACTCATCACCTGAATGCCAGCAAGACATCACTGGGCGTTACGATGGGAAAATGAACACCACCACGCTGGTTTTGTCACGCAATGTTACTCTAATCGACCCCACTGTGACCTTCTTACGCATTCAAGTTTTGCTCAGTTCCTCAAGCACTACTCTTGTTCTTCCTTGAGAGTAATTCGACTCTTGTAAAATAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU106730 lncRNA downstream 2943 62817 ~ 150965 (-) True G93801
TU106731 lncRNA downstream 15034 132552 ~ 138874 (-) True G93802
TU106734 lncRNA downstream 94313 59358 ~ 59595 (-) True G93805
TU106764 lncRNA upstream 32982 188604 ~ 189338 (-) True G93829
TU106770 lncRNA upstream 43536 199158 ~ 202946 (-) True G93835
TU106815 lncRNA upstream 125372 280994 ~ 281211 (-) True G93873
TU106892 lncRNA upstream 244871 400493 ~ 401772 (-) True G93934
TU106917 lncRNA upstream 353449 509071 ~ 509303 (-) True G93954
CI01000016_00099623_00100245.mRNA mRNA downstream 53663 98834 ~ 100245 (-) True CI01000016_00099623_00100245
CI01000016_00079894_00094596.mRNA mRNA downstream 59312 78944 ~ 94596 (-) True CI01000016_00079894_00094596
CI01000016_00068703_00072323.mRNA mRNA downstream 80827 68658 ~ 73081 (-) True CI01000016_00068703_00072323
CI01000016_00012244_00028573.mRNA mRNA downstream 125335 11615 ~ 28573 (-) True CI01000016_00012244_00028573
CI01000016_00002941_00010117.mRNA mRNA downstream 143791 2493 ~ 10117 (-) True CI01000016_00002941_00010117
CI01000016_00166492_00172759.mRNA mRNA upstream 10463 166085 ~ 172759 (-) True CI01000016_00166492_00172759
CI01000016_00251025_00251471.mRNA mRNA upstream 94596 250218 ~ 251486 (-) True CI01000016_00251025_00251471
CI01000016_00448107_00452861.mRNA mRNA upstream 292236 447858 ~ 452861 (-) True CI01000016_00448107_00452861
CI01000016_00456765_00460615.mRNA mRNA upstream 299206 454828 ~ 461209 (-) True CI01000016_00456765_00460615
CI01000016_00471859_00490955.mRNA mRNA upstream 315161 470783 ~ 490955 (-) True CI01000016_00471859_00490955
TU107853 other upstream 2115214 2270836 ~ 2276275 (-) True G94786
TU108180 other upstream 2829638 2985260 ~ 2985641 (-) True G95070
TU109910 other upstream 3479985 3635607 ~ 3665313 (-) True G96628
TU110003 other upstream 3710139 3865761 ~ 3890326 (-) True G96690
TU110416 other upstream 4757086 4912708 ~ 4923404 (-) True G97040

Expression Profile